Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields
出版年份 2022 全文链接
标题
Genomic insights into the origin, adaptive evolution, and herbicide resistance of Leptochloa chinensis, a devastating tetraploid weedy grass in rice fields
作者
关键词
-
出版物
Molecular Plant
Volume -, Issue -, Pages -
出版商
Elsevier BV
发表日期
2022-05-06
DOI
10.1016/j.molp.2022.05.001
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- An ABCC-type transporter endowing glyphosate resistance in plants
- (2021) Lang Pan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance
- (2021) Ke Chen et al. BMC GENOMICS
- IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
- (2020) Bui Quang Minh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Confirmation and Characterization of Cyhalofop-Butyl-Resistant Chinese Sprangletop (Leptochloa chinensis) Populations from China
- (2020) Yajun Peng et al. WEED SCIENCE
- Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
- (2020) Robert VanBuren et al. Nature Communications
- Mechanisms of evolved herbicide resistance
- (2020) Todd A Gaines et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Identification of a cytochrome P450 hydroxylase, CYP81E22, as a causative gene for the high sensitivity of soybean to herbicide bentazon
- (2020) Shin Kato et al. THEORETICAL AND APPLIED GENETICS
- GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
- (2020) T. Rhyker Ranallo-Benavidez et al. Nature Communications
- The Genomes of the Allohexaploid Echinochloa crus-galli and Its Progenitors Provide Insights into Polyploidization-Driven Adaptation
- (2020) Chu-Yu Ye et al. Molecular Plant
- Non-destructive phenotyping for early seedling vigor in direct-seeded rice
- (2020) Annamalai Anandan et al. Plant Methods
- Reference genes for the study of herbicide stress responses in Leptochloa chinensis (L.) Nees and estimation of ACCase expression in cyhalofop-butyl resistant populations
- (2020) Yi Zhang et al. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY
- Development of a goosegrass (Eleusine indica ) draft genome and application to weed science research
- (2019) Hui Zhang et al. PEST MANAGEMENT SCIENCE
- PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
- (2019) Sean P. Gordon et al. BMC GENOMICS
- Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
- (2019) Daehwan Kim et al. NATURE BIOTECHNOLOGY
- Fenoxaprop-P -ethyl resistance conferred by cytochrome P450s and target site mutation in Alopecurus japonicus
- (2018) Guoqi Chen et al. PEST MANAGEMENT SCIENCE
- Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies
- (2018) Michael J. Roach et al. BMC BIOINFORMATICS
- Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat
- (2018) Ilya Kirov et al. Comparative Cytogenetics
- LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes
- (2017) Rosa Maria Cossu et al. Genome Biology and Evolution
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes
- (2017) Honghe Sun et al. Molecular Plant
- Reconstructing the genome of the most recent common ancestor of flowering plants
- (2017) Florent Murat et al. NATURE GENETICS
- Mechanism of resistance to cyhalofop-butyl in Chinese sprangletop ( Leptochloa chinensis (L.) Nees)
- (2017) Jiaxing Yu et al. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY
- Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants
- (2017) Meixia Zhao et al. PLANT CELL
- Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed
- (2017) Longbiao Guo et al. Nature Communications
- A global analysis of alternative tillage and crop establishment practices for economically and environmentally efficient rice production
- (2017) Debashis Chakraborty et al. Scientific Reports
- Sequencing and comparative analyses of the genomes of zoysiagrasses
- (2016) Hidenori Tanaka et al. DNA RESEARCH
- Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss
- (2016) Pavel Avdeyev et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Using intron position conservation for homology-based gene prediction
- (2016) Jens Keilwagen et al. NUCLEIC ACIDS RESEARCH
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
- (2015) Robert VanBuren et al. NATURE
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- Plant genome size variation: bloating and purging DNA
- (2014) T. P. Michael Briefings in Functional Genomics
- Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm
- (2014) Alexandre Lomsadze et al. NUCLEIC ACIDS RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids
- (2014) M. R. Woodhouse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Two Evolutionarily Distinct Classes of Paleopolyploidy
- (2013) Olivier Garsmeur et al. MOLECULAR BIOLOGY AND EVOLUTION
- Cytochrome P450 genes induced by bispyribac-sodium treatment in a multiple-herbicide-resistant biotype ofEchinochloa phyllopogon
- (2013) Satoshi Iwakami et al. PEST MANAGEMENT SCIENCE
- Deciphering the evolution of herbicide resistance in weeds
- (2013) Christophe Délye et al. TRENDS IN GENETICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy
- (2012) H. Tang et al. GENETICS
- Reference genome sequence of the model plant Setaria
- (2012) Jeffrey L Bennetzen et al. NATURE BIOTECHNOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- Inference of human population history from individual whole-genome sequences
- (2011) Heng Li et al. NATURE
- Establishing a time-scale for plant evolution
- (2011) John T. Clarke et al. NEW PHYTOLOGIST
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
- (2010) Christian Rödelsperger et al. PLoS One
- Food Security: The Challenge of Feeding 9 Billion People
- (2010) H. C. J. Godfray et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The Last Glacial Maximum
- (2009) P. U. Clark et al. SCIENCE
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now