Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Different Temperature Stress Adaptation of Manila Clam

Comparative transcriptome analysis to reveal the genes and pathways associated with adaptation strategies in two different populations of Manila clam (Ruditapes philippinarum) under acute temperature challenge

(2022) Kifat Jahan et al.   AQUACULTURE

Molecular cloning and characterization of Y‐box gene (Rpybx) from Manila clam and its expression analysis in different strains under low‐temperature stress

(2020) S. Dong et al.   ANIMAL GENETICS

Gene network analyses support subfunctionalization hypothesis for duplicated hsp70 genes in the Antarctic clam

(2020) Abigail Ramsøe et al.   CELL STRESS & CHAPERONES

New insights into the Manila clam and PAMPs interaction based on RNA-seq analysis of clam through in vitro challenges with LPS, PGN, and poly(I:C)

(2020) Kunyin Jiang et al.   BMC GENOMICS

Adaptations to the mudflat: Insights from physiological and transcriptional responses to thermal stress in a burrowing bivalve Sinonovacula constricta

(2019) Wen-yi Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Physiological and immunological responses to mass mortality in noble scallop Chlamys nobilis cultured in Nan'ao waters of Shantou, China

(2018) Yingying Lan et al.   FISH & SHELLFISH IMMUNOLOGY

Immune response to temperature stress in three bivalve species: Pacific oyster Crassostrea gigas, Mediterranean mussel Mytilus galloprovincialis and mud cockle Katelysia rhytiphora

(2018) M.A. Rahman et al.   FISH & SHELLFISH IMMUNOLOGY

The transcriptional response of the Pacific oyster Crassostrea gigas against acute heat stress

(2017) Chuanyan Yang et al.   FISH & SHELLFISH IMMUNOLOGY

Genetic analysis assessed by microsatellites for a diallel mating design of two geographical stocks of the blood clam Tegillarca granosa

(2017) Yinghui Dong et al.   Genes & Genomics

Genome-Wide DNA Methylation Profiling Reveals Epigenetic Adaptation of Stickleback to Marine and Freshwater Conditions

(2017) Artem V. Artemov et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomic responses to low temperature stress in the Manila clam, Ruditapes philippinarum

(2016) Hongtao Nie et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis of the unfolded protein response in hemocytes of Litopenaeus vannamei

(2016) Yi-Hong Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Euryhaline Adaptation of Crassostrea gigas

(2016) Xuelin Zhao et al.   MARINE BIOTECHNOLOGY

Immune responses of phenoloxidase and superoxide dismutase in the manila clam Venerupis philippinarum challenged with Vibrio tapetis – Part II: Combined effect of temperature and two V. tapetis strains

(2015) Gaëlle Richard et al.   FISH & SHELLFISH IMMUNOLOGY

Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations

(2015) Ovidiu D. Iancu et al.   Frontiers in Genetics

Co-expression network analysis identifies transcriptional modules in the mouse liver

(2014) Wei Liu et al.   MOLECULAR GENETICS AND GENOMICS

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

(2014) Yang Yang et al.   Nature Communications

Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

(2013) X. Fu et al.   Molecular Ecology Resources

Integrative mouse and human mRNA studies using WGCNA nominates novel candidate genes involved in the pathogenesis of major depressive disorder

(2013) Karim Malki et al.   PHARMACOGENOMICS

Thermal biology of zebrafish (Danio rerio)

(2010) J.F. López-Olmeda et al.   JOURNAL OF THERMAL BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS