Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
出版年份 2015 全文链接
标题
Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
作者
关键词
-
出版物
Frontiers in Genetics
Volume 6, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2015-05-13
DOI
10.3389/fgene.2015.00174
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Transcriptome-wide Landscape of Pre-mRNA Alternative Splicing Associated with Metastatic Colonization
- (2014) Zhi-xiang Lu et al. MOLECULAR CANCER RESEARCH
- De-regulation of gene expression and alternative splicing affects distinct cellular pathways in the aging hippocampus
- (2014) Roman M. Stilling et al. Frontiers in Cellular Neuroscience
- Selection for Drinking in the Dark Alters Brain Gene Coexpression Networks
- (2013) Ovidiu D. Iancu et al. ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH
- SplicingCompass: differential splicing detection using RNA-Seq data
- (2013) Moritz Aschoff et al. BIOINFORMATICS
- Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana
- (2013) Federico M. Giorgi et al. BIOINFORMATICS
- Topoisomerases facilitate transcription of long genes linked to autism
- (2013) Ian F. King et al. NATURE
- Differential Network Analysis Reveals Genetic Effects on Catalepsy Modules
- (2013) Ovidiu D. Iancu et al. PLoS One
- Utilizing RNA-Seq data for de novo coexpression network inference
- (2012) Ovidiu D. Iancu et al. BIOINFORMATICS
- A systematic comparison of genome-scale clustering algorithms
- (2012) Jeremy J Jay et al. BMC BIOINFORMATICS
- Integrating many co-splicing networks to reconstruct splicing regulatory modules
- (2012) Chao Dai et al. BMC Systems Biology
- Function of alternative splicing
- (2012) Olga Kelemen et al. GENE
- Genes, behavior and next-generation RNA sequencing
- (2012) R. Hitzemann et al. GENES BRAIN AND BEHAVIOR
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Human-Specific Transcriptional Networks in the Brain
- (2012) Genevieve Konopka et al. NEURON
- The BioGRID interaction database: 2013 update
- (2012) Andrew Chatr-aryamontri et al. NUCLEIC ACIDS RESEARCH
- Comparing Statistical Methods for Constructing Large Scale Gene Networks
- (2012) Jeffrey D. Allen et al. PLoS One
- Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
- (2012) Maayan Amit et al. Cell Reports
- Statistical Properties of Multivariate Distance Matrix Regression for High-Dimensional Data Analysis
- (2012) Matthew A. Zapala et al. Frontiers in Genetics
- Gene networks and haloperidol-induced catalepsy
- (2011) O. D. Iancu et al. GENES BRAIN AND BEHAVIOR
- Computational methods for transcriptome annotation and quantification using RNA-seq
- (2011) Manuel Garber et al. NATURE METHODS
- Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
- (2011) Daniel Bottomly et al. PLoS One
- Substance-specific and shared transcription and epigenetic changes in the human hippocampus chronically exposed to cocaine and alcohol
- (2011) Z. Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Is My Network Module Preserved and Reproducible?
- (2011) Peter Langfelder et al. PLoS Computational Biology
- Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse
- (2010) Ovidiu D Iancu et al. BMC GENOMICS
- An Alternative Splicing Network Links Cell-Cycle Control to Apoptosis
- (2010) Michael J. Moore et al. CELL
- An ESRP-regulated splicing programme is abrogated during the epithelial–mesenchymal transition
- (2010) Claude C Warzecha et al. EMBO JOURNAL
- Mammalian microRNAs predominantly act to decrease target mRNA levels
- (2010) Huili Guo et al. NATURE
- SFmap: a web server for motif analysis and prediction of splicing factor binding sites
- (2010) I. Paz et al. NUCLEIC ACIDS RESEARCH
- Global regulation of alternative splicing during myogenic differentiation
- (2010) Christopher S. Bland et al. NUCLEIC ACIDS RESEARCH
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis
- (2009) M. L. Yamamoto et al. BLOOD
- Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
- (2009) Steffen Durinck et al. Nature Protocols
- Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis
- (2009) Matthew B. Johnson et al. NEURON
- A computational approach for genome-wide mapping of splicing factor binding sites
- (2009) Martin Akerman et al. GENOME BIOLOGY
- Global analysis of alternative splicing regulation by insulin and wingless signaling in Drosophila cells
- (2009) Britta Hartmann et al. GENOME BIOLOGY
- Studying alternative splicing regulatory networks through partial correlation analysis
- (2009) Liang Chen et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- A Transcriptome Database for Astrocytes, Neurons, and Oligodendrocytes: A New Resource for Understanding Brain Development and Function
- (2008) J. D. Cahoy et al. JOURNAL OF NEUROSCIENCE
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
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