Expression analysis and function of mitochondrial genome-encoded microRNAs

miR-146a inhibits mitochondrial dysfunction and myocardial infarction by targeting cyclophilin D

(2021) Qiang Su et al.   Molecular Therapy-Nucleic Acids

The RNA Atlas expands the catalog of human non-coding RNAs

(2021) Lucia Lorenzi et al.   NATURE BIOTECHNOLOGY

Metabolic Reprogramming in Triple-Negative Breast Cancer

(2020) Xiangyu Sun et al.   Frontiers in Oncology

Mitochondrial miRNA determines chemoresistance by reprogramming metabolism and regulating mitochondrial transcription

(2019) Song Fan et al.   CANCER RESEARCH

Mitochondrial ncRNA targeting induces cell cycle arrest and tumor growth inhibition of MDA-MB-231 breast cancer cells through reduction of key cell cycle progression factors

(2019) Christopher Fitzpatrick et al.   Cell Death & Disease

Breast Cancer Subtypes Present a Differential Production of Reactive Oxygen Species (ROS) and Susceptibility to Antioxidant Treatment

(2019) Fabiola Lilí Sarmiento-Salinas et al.   Frontiers in Oncology

Role of mitochondria in rescuing glycolytically inhibited subpopulation of triple negative but not hormone-responsive breast cancer cells

(2019) Asmaa Reda et al.   Scientific Reports

Astrocytes Attenuate Mitochondrial Dysfunctions in Human Dopaminergic Neurons Derived from iPSC

(2018) Fang Du et al.   Stem Cell Reports

SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation

(2018) Roberto Vendramin et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

hsa-miR-4485 regulates mitochondrial functions and inhibits the tumorigenicity of breast cancer cells

(2017) Lakshmi Sripada et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Mitochondrial DNA depletion by ethidium bromide decreases neuronal mitochondrial creatine kinase: Implications for striatal energy metabolism

(2017) Emily Booth Warren et al.   PLoS One

AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1

(2017) Traci L. Marin et al.   Science Signaling

AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1

(2017) Traci L. Marin et al.   Science Signaling

Mitochondria and Cancer

(2016) Sejal Vyas et al.   CELL

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Melanoma addiction to the long non-coding RNA SAMMSON

(2016) Eleonora Leucci et al.   NATURE

Human mitochondrial transcription factors TFAM and TFB2M work synergistically in promoter melting during transcription initiation

(2016) Aparna Ramachandran et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-27b Regulates Mitochondria Biogenesis in Myocytes

(2016) Linyuan Shen et al.   PLoS One

Mitochondrial miRNA (MitomiR): a new player in cardiovascular health

(2015) Hemalatha Srinivasan et al.   CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY

The mitochondrial lncRNA ASncmtRNA-2 is induced in aging and replicative senescence in Endothelial Cells

(2015) Valentina Bianchessi et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Low doses of ultraviolet radiation and oxidative damage induce dramatic accumulation of mitochondrial DNA replication intermediates, fork regression, and replication initiation shift

(2015) Rubén Torregrosa-Muñumer et al.   MOLECULAR BIOLOGY OF THE CELL

Tetracyclines Disturb Mitochondrial Function across Eukaryotic Models: A Call for Caution in Biomedical Research

(2015) Norman Moullan et al.   Cell Reports

A Complex Genome-MicroRNA Interplay in Human Mitochondria

(2015) Santosh Shinde et al.   Biomed Research International

MicroRNA-126 Suppresses Mesothelioma Malignancy by Targeting IRS1 and Interfering with the Mitochondrial Function

(2014) Marco Tomasetti et al.   ANTIOXIDANTS & REDOX SIGNALING

MicroRNA Directly Enhances Mitochondrial Translation during Muscle Differentiation

(2014) Xiaorong Zhang et al.   CELL

microRNA-200a Inhibits Cell Proliferation by Targeting Mitochondrial Transcription Factor A in Breast Cancer

(2014) Jia Yao et al.   DNA AND CELL BIOLOGY

PGC-1α mediates mitochondrial biogenesis and oxidative phosphorylation in cancer cells to promote metastasis

(2014) Valerie S. LeBleu et al.   NATURE CELL BIOLOGY

miR-181c Regulates the Mitochondrial Genome, Bioenergetics, and Propensity for Heart Failure In Vivo

(2014) Samarjit Das et al.   PLoS One

SIRT1 and other sirtuins in metabolism

(2014) Hung-Chun Chang et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

miREval 2.0: a web tool for simple microRNA prediction in genome sequences

(2013) Dadi Gao et al.   BIOINFORMATICS

The role of microRNAs in mitochondria in cancer

(2013) Julie Bienertova-Vasku et al.   CANCER LETTERS

The mitochondrial genome encodes abundant small noncoding RNAs

(2013) Seungil Ro et al.   CELL RESEARCH

miR-761 regulates the mitochondrial network by targeting mitochondrial fission factor

(2013) Bo Long et al.   FREE RADICAL BIOLOGY AND MEDICINE

MitomiRs delineating the intracellular localization of microRNAs at mitochondria

(2013) S. Bandiera et al.   FREE RADICAL BIOLOGY AND MEDICINE

Transcription-independent role for human mitochondrial RNA polymerase in mitochondrial ribosome biogenesis

(2013) Yulia V. Surovtseva et al.   NUCLEIC ACIDS RESEARCH

Mitochondrial retrograde signaling induces epithelial–mesenchymal transition and generates breast cancer stem cells

(2013) M Guha et al.   ONCOGENE

Mapping of Mitochondrial RNA-Protein Interactions by Digital RNase Footprinting

(2013) Ganqiang Liu et al.   Cell Reports

Functional microRNA targets in protein coding sequences

(2012) Martin Reczko et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Nuclear miRNA Regulates the Mitochondrial Genome in the Heart

(2012) Samarjit Das et al.   CIRCULATION RESEARCH

Generation of miRNA sponge constructs

(2012) Joost Kluiver et al.   METHODS

Assessment of mitochondrial respiratory chain enzymatic activities on tissues and cultured cells

(2012) Marco Spinazzi et al.   Nature Protocols

A fast ab-initio method for predicting miRNA precursors in genomes

(2012) Sébastien Tempel et al.   NUCLEIC ACIDS RESEARCH

The effect of ethidium bromide and chloramphenicol on mitochondrial biogenesis in primary human fibroblasts

(2012) Li-Pin Kao et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

SHRiMP2: Sensitive yet Practical Short Read Mapping

(2011) Matei David et al.   BIOINFORMATICS

The Human Mitochondrial Transcriptome

(2011) Tim R. Mercer et al.   CELL

Nuclear Outsourcing of RNA Interference Components to Human Mitochondria

(2011) Simonetta Bandiera et al.   PLoS One

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins

(2011) O. Rackham et al.   RNA

Nuclear localization of the mitochondrial ncRNAs in normal and cancer cells

(2011) Eduardo Landerer et al.   CELLULAR ONCOLOGY

AMPK as a metabolic tumor suppressor: control of metabolism and cell growth

(2010) Zhijun Luo et al.   Future Oncology

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

(2010) Sihem Cheloufi et al.   NATURE

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-210 Regulates Mitochondrial Free Radical Response to Hypoxia and Krebs Cycle in Cancer Cells by Targeting Iron Sulfur Cluster Protein ISCU

(2010) Elena Favaro et al.   PLoS One

MatureBayes: A Probabilistic Algorithm for Identifying the Mature miRNA within Novel Precursors

(2010) Katerina Gkirtzou et al.   PLoS One

MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis

(2010) Betsy T. Kren et al.   RNA Biology

miR-30 Regulates Mitochondrial Fission through Targeting p53 and the Dynamin-Related Protein-1 Pathway

(2010) Jincheng Li et al.   PLoS Genetics

Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells

(2009) Christine Mayr et al.   CELL

AMPK regulates energy expenditure by modulating NAD+ metabolism and SIRT1 activity

(2009) Carles Cantó et al.   NATURE

Mitochondrial Cytochrome B Gene Mutation Promotes Tumor Growth in Bladder Cancer

(2008) S. Dasgupta et al.   CANCER RESEARCH

Glucose Restriction Inhibits Skeletal Myoblast Differentiation by Activating SIRT1 through AMPK-Mediated Regulation of Nampt

(2008) Marcella Fulco et al.   DEVELOPMENTAL CELL

SIRT1 Modulation of the Acetylation Status, Cytosolic Localization, and Activity of LKB1

(2008) Fan Lan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

AMPK Phosphorylation of Raptor Mediates a Metabolic Checkpoint

(2008) Dana M. Gwinn et al.   MOLECULAR CELL

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

miRDB: A microRNA target prediction and functional annotation database with a wiki interface

(2008) X. Wang   RNA