标题
The RNA Atlas expands the catalog of human non-coding RNAs
作者
关键词
-
出版物
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-06-18
DOI
10.1038/s41587-021-00936-1
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing
- (2020) Charles Cole et al. GENOME RESEARCH
- The Landscape of Circular RNA in Cancer
- (2019) Josh N. Vo et al. CELL
- Nanopore native RNA sequencing of a human poly(A) transcriptome
- (2019) Rachael E. Workman et al. NATURE METHODS
- MirGeneDB 2.0: the metazoan microRNA complement
- (2019) Bastian Fromm et al. NUCLEIC ACIDS RESEARCH
- Minimap2: pairwise alignment for nucleotide sequences
- (2018) Heng Li BIOINFORMATICS
- NanoPack: visualizing and processing long-read sequencing data
- (2018) Wouter De Coster et al. BIOINFORMATICS
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- UniProt: the universal protein knowledgebase
- (2018) The UniProt Consortium NUCLEIC ACIDS RESEARCH
- Therapeutic Targeting of Long Non-Coding RNAs in Cancer
- (2018) Gayatri Arun et al. TRENDS IN MOLECULAR MEDICINE
- Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context
- (2018) Hua-Sheng Chiu et al. Cell Reports
- Data-Driven Rescoring of Metabolite Annotations Significantly Improves Sensitivity
- (2018) Ana S. C. Silva et al. ANALYTICAL CHEMISTRY
- Long noncoding RNA expression profiling in cancer: Challenges and opportunities
- (2018) Lucía Lorenzi et al. GENES CHROMOSOMES & CANCER
- The UCSC Genome Browser database: 2019 update
- (2018) Maximilian Haeussler et al. NUCLEIC ACIDS RESEARCH
- GENCODE reference annotation for the human and mouse genomes
- (2018) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- A comprehensive overview of genomic imprinting in breast and its deregulation in cancer
- (2018) Tine Goovaerts et al. Nature Communications
- High-confidence coding and noncoding transcriptome maps
- (2017) Bo-Hyun You et al. GENOME RESEARCH
- An atlas of human long non-coding RNAs with accurate 5′ ends
- (2017) Chung-Chau Hon et al. NATURE
- An integrated expression atlas of miRNAs and their promoters in human and mouse
- (2017) Derek de Rie et al. NATURE BIOTECHNOLOGY
- HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
- (2017) Ivan V Kulakovskiy et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2018
- (2017) Daniel R Zerbino et al. NUCLEIC ACIDS RESEARCH
- miRCarta: a central repository for collecting miRNA candidates
- (2017) Christina Backes et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
- (2017) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Diverse alternative back-splicing and alternative splicing landscape of circular RNAs
- (2016) Xiao-Ou Zhang et al. GENOME RESEARCH
- Melanoma addiction to the long non-coding RNA SAMMSON
- (2016) Eleonora Leucci et al. NATURE
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
- (2016) Eric L Van Nostrand et al. NATURE METHODS
- The biogenesis and emerging roles of circular RNAs
- (2016) Ling-Ling Chen NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Desktop Genetics
- (2016) Soren H Hough et al. Personalized Medicine
- CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells
- (2016) S. John Liu et al. SCIENCE
- Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation
- (2016) Max A Horlbeck et al. eLife
- The landscape of genomic imprinting across diverse adult human tissues
- (2015) Yael Baran et al. GENOME RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation
- (2015) Dimos Gaidatzis et al. NATURE BIOTECHNOLOGY
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- The landscape of long noncoding RNAs in the human transcriptome
- (2015) Matthew K Iyer et al. NATURE GENETICS
- Nucleic Acids Research
- (2015) NUCLEIC ACIDS RESEARCH
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- Tissue-based map of the human proteome
- (2015) M. Uhlen et al. SCIENCE
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- Long-Term Endurance Exercise in Humans Stimulates Cell Fusion of Myoblasts along with Fusogenic Endogenous Retroviral Genes In Vivo
- (2015) Sebastian Frese et al. PLoS One
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks
- (2014) Hua-Sheng Chiu et al. GENOME RESEARCH
- Unambiguous Identification of miRNA:Target Site Interactions by Different Types of Ligation Reactions
- (2014) Stefanie Grosswendt et al. MOLECULAR CELL
- A draft map of the human proteome
- (2014) Min-Sik Kim et al. NATURE
- The multilayered complexity of ceRNA crosstalk and competition
- (2014) Yvonne Tay et al. NATURE
- A promoter-level mammalian expression atlas
- (2014) NATURE
- DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions
- (2014) Ioannis S. Vlachos et al. NUCLEIC ACIDS RESEARCH
- The landscape and therapeutic relevance of cancer-associated transcript fusions
- (2014) K Yoshihara et al. ONCOGENE
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
- (2013) Luke A. Gilbert et al. CELL
- Circular RNAs are a large class of animal RNAs with regulatory potency
- (2013) Sebastian Memczak et al. NATURE
- miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions
- (2013) Sheng-Da Hsu et al. NUCLEIC ACIDS RESEARCH
- CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
- (2013) Liguo Wang et al. NUCLEIC ACIDS RESEARCH
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- ceRNA Cross-Talk in Cancer: When ce-bling Rivalries Go Awry
- (2013) F. A. Karreth et al. Cancer Discovery
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions
- (2012) Luiz A Bovolenta et al. BMC GENOMICS
- Triplexator: Detecting nucleic acid triple helices in genomic and transcriptomic data
- (2012) F. A. Buske et al. GENOME RESEARCH
- Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- (2012) J. Wang et al. GENOME RESEARCH
- The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
- (2012) Jordi Barretina et al. NATURE
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
- (2012) Juan Antonio Vizcaíno et al. NUCLEIC ACIDS RESEARCH
- SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
- (2012) Mikhail Pachkov et al. NUCLEIC ACIDS RESEARCH
- Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types
- (2012) Julia Salzman et al. PLoS One
- Circular RNAs are abundant, conserved, and associated with ALU repeats
- (2012) W. R. Jeck et al. RNA
- Functional analysis of transcription factor binding sites in human promoters
- (2012) Troy W Whitfield et al. GENOME BIOLOGY
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
- (2011) Leonardo Salmena et al. CELL
- Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
- (2011) M. N. Cabili et al. GENES & DEVELOPMENT
- Non-coding RNAs in human disease
- (2011) Manel Esteller NATURE REVIEWS GENETICS
- Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs
- (2011) David M Garcia et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
- (2011) Marc R. Friedländer et al. NUCLEIC ACIDS RESEARCH
- Genomewide characterization of non-polyadenylated RNAs
- (2011) Li Yang et al. GENOME BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- PHAST and RPHAST: phylogenetic analysis with space/time models
- (2010) M. J. Hubisz et al. BRIEFINGS IN BIOINFORMATICS
- A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
- (2010) Laura Poliseno et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- miRecords: an integrated resource for microRNA-target interactions
- (2008) F. Xiao et al. NUCLEIC ACIDS RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started