DNA metabarcoding reveals vertical variation and hidden diversity of Alveolata and Rhizaria communities in the western North Pacific

Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre

(2021) Gerid A. Ollison et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Ecology, Morphology, Phylogeny and Taxonomic Revision of Giant Radiolarians, Orodaria ord. nov. (Radiolaria; Rhizaria; SAR)

(2021) Yasuhide Nakamura et al.   PROTIST

Seasonal changes in the community structure of chaetognaths and the life cycle of the dominant chaetognath Eukrohnia hamata in the Oyashio region, western subarctic Pacific

(2020) Yoshimi Tone Matsumoto et al.   Plankton & Benthos Research

Vertical niche definition of test‐bearing protists (Rhizaria) into the twilight zone revealed by in situ imaging

(2020) Tristan Biard et al.   LIMNOLOGY AND OCEANOGRAPHY

Ciliate diversity and distribution across horizontal and vertical scales in the open ocean

(2020) Oriol Canals et al.   MOLECULAR ECOLOGY

Capturing open ocean biodiversity: comparing environmental DNA metabarcoding to the continuous plankton recorder

(2020) Leonie Suter et al.   MOLECULAR ECOLOGY

Toxic HAB species from the Sea of Okhotsk detected by a metagenetic approach, seasonality and environmental drivers

(2019) Sirje Sildever et al.   HARMFUL ALGAE

DNA metabarcoding reveals organisms contributing to particulate matter flux to abyssal depths in the North East Pacific ocean

(2019) Christina M. Preston et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The diversity and biogeography of microeukaryotes in the euphotic zone of the northwestern Pacific Ocean

(2019) Peng-Fei Wu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Gazelletta kashiwaensis sp. nov. (Medusettidae, Phaeodaria, Cercozoa), Its Morphology, Phylogeny, Distribution, and Feeding Behavior

(2018) Yasuhide Nakamura et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Numerical experiments based on a coupled physical–biochemical ocean model to study the Kuroshio-induced nutrient supply on the shelf-slope region off the southwestern coast of Japan

(2018) Hiroshi Kuroda et al.   JOURNAL OF MARINE SYSTEMS

High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding

(2018) Andres Gutierrez-Rodriguez et al.   ISME Journal

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates

(2017) Jürgen F H Strassert et al.   ISME Journal

Spatio-temporal structure of the jellyfish community in the transition zone of cold and warm currents in the northwest Pacific

(2017) Hiroxi Morita et al.   Plankton & Benthos Research

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

In situ imaging reveals the biomass of giant protists in the global ocean

(2016) Tristan Biard et al.   NATURE

A 150-year variation of the Kuroshio transport inferred from coral nitrogen isotope signature

(2016) Atsuko Yamazaki et al.   PALEOCEANOGRAPHY

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

(2015) Noan Le Bescot et al.   ENVIRONMENTAL MICROBIOLOGY

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

A New Phaeodarian Species Discovered from the Japan Sea Proper Water,Auloscena pleurocladasp. nov. (Aulosphaeridae, Phaeosphaerida, Phaeodaria)

(2015) Yasuhide Nakamura et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Comparative study of the validity of three regions of the 18S-rRNA gene for massively parallel sequencing-based monitoring of the planktonic eukaryote community

(2015) Akifumi S. Tanabe et al.   Molecular Ecology Resources

High-Throughput Sequencing—The Key to Rapid Biodiversity Assessment of Marine Metazoa?

(2015) Inga Mohrbeck et al.   PLoS One

Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa)

(2015) Yasuhide Nakamura et al.   PROTIST

Aulographis japonica sp. nov. (Phaeodaria, Aulacanthida, Aulacanthidae), an abundant zooplankton in the deep sea of the Sea of Japan

(2014) Yasuhide Nakamura et al.   Plankton & Benthos Research

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages

(2013) Penelope K. Lindeque et al.   PLoS One

Diversity and community dynamics of protistan microplankton in Sagami Bay revealed by 18S rRNA gene clone analysis

(2013) Sau Pin Kok et al.   Plankton & Benthos Research

Congruence between euphausiid community and water region in the northwestern Pacific: particularly in the Oyashio–Kuroshio Mixed Water Region

(2012) Sayaka Sogawa et al.   JOURNAL OF OCEANOGRAPHY

Study of DNA extraction methods for use in loop-mediated isothermal amplification detection of single resting cysts in the toxic dinoflagellates Alexandrium tamarense and A. catenella

(2012) Satoshi Nagai et al.   Marine Genomics

Radiolaria Associated with Large Diversity of Marine Alveolates

(2012) Jon Bråte et al.   PROTIST

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Depth matters: Microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries

(2010) Astrid Schnetzer et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing

(2010) Man Kit Cheung et al.   ISME Journal

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Water mass variability in the western North Pacific detected in a 15-year eddy resolving ocean reanalysis

(2009) Yasumasa Miyazawa et al.   JOURNAL OF OCEANOGRAPHY

Spawning ground and larval transport processes of jack mackerel Trachurus japonicus in the shelf-break region of the southern East China Sea

(2008) Chiyuki Sassa et al.   CONTINENTAL SHELF RESEARCH

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

Karenia brevis red tides, brevetoxins in the food web, and impacts on natural resources: Decadal advancements

(2008) J.H. Landsberg et al.   HARMFUL ALGAE