Host and pathogen response to bacteriophage engineered against Mycobacterium abscessus lung infection

Bacteriophage therapy for infections in CF

(2021) Benjamin K. Chan et al.   PEDIATRIC PULMONOLOGY

Considerations for Phage Therapy Against Mycobacterium abscessus

(2021) Abrar Senhaji-Kacha et al.   Frontiers in Microbiology

Stepwise pathogenic evolution of Mycobacterium abscessus

(2021) Josephine M. Bryant et al.   SCIENCE

Mycobacterium abscessus Strain Morphotype Determines Phage Susceptibility, the Repertoire of Therapeutically Useful Phages, and Phage Resistance

(2021) Rebekah M. Dedrick et al.   mBio

The Prophage and Plasmid Mobilome as a Likely Driver of Mycobacterium abscessus Diversity

(2021) Rebekah M. Dedrick et al.   mBio

Changes in the Cystic Fibrosis Airway Microbiome in Response to CFTR Modulator Therapy

(2021) Buqing Yi et al.   Frontiers in Cellular and Infection Microbiology

Phage Therapy for Antibiotic-Resistant Bacterial Infections

(2021) Graham F. Hatfull et al.   Annual Review of Medicine

Nontuberculous mycobacteria in cystic fibrosis

(2021) Jerry A. Nick et al.   CURRENT OPINION IN PULMONARY MEDICINE

Potent antibody-mediated neutralization limits bacteriophage treatment of a pulmonary Mycobacterium abscessus infection

(2021) Rebekah M. Dedrick et al.   NATURE MEDICINE

Genomic characterization of sporadic isolates of the dominant clone of Mycobacterium abscessus subspecies massiliense

(2021) Rebecca M. Davidson et al.   Scientific Reports

Extreme Drug Tolerance of Mycobacterium abscessus “Persisters”

(2020) Yee-Kuen Yam et al.   Frontiers in Microbiology

Urine lipoarabinomannan as a marker for low-risk of NTM infection in the CF airway

(2020) Prithwiraj De et al.   Journal of Cystic Fibrosis

Phage-Antibiotic Synergy Is Driven by a Unique Combination of Antibacterial Mechanism of Action and Stoichiometry

(2020) Carmen Gu Liu et al.   mBio

Treatment of Nontuberculous Mycobacterial Pulmonary Disease: An Official ATS/ERS/ESCMID/IDSA Clinical Practice Guideline

(2020) Charles L Daley et al.   CLINICAL INFECTIOUS DISEASES

Lessons Learned From the First 10 Consecutive Cases of Intravenous Bacteriophage Therapy to Treat Multidrug-Resistant Bacterial Infections at a Single Center in the United States

(2020) Saima Aslam et al.   Open Forum Infectious Diseases

Pseudomonas aeruginosa adaptation and evolution in patients with cystic fibrosis

(2020) Elio Rossi et al.   NATURE REVIEWS MICROBIOLOGY

Engineered bacteriophages for treatment of a patient with a disseminated drug-resistant Mycobacterium abscessus

(2019) Rebekah M. Dedrick et al.   NATURE MEDICINE

Efficacy and safety of the elexacaftor plus tezacaftor plus ivacaftor combination regimen in people with cystic fibrosis homozygous for the F508del mutation: a double-blind, randomised, phase 3 trial

(2019) Harry G M Heijerman et al.   LANCET

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Antibody response against Mycobacterium avium complex in cystic fibrosis patients measured by a novel IgG ELISA test

(2018) C. Ravnholt et al.   Journal of Cystic Fibrosis

Changes in Serum IgA Antibody Levels against the Glycopeptidolipid Core Antigen during Antibiotic Treatment of Mycobacterium avium Complex Lung Disease

(2017) Byung Woo Jhun et al.   JAPANESE JOURNAL OF INFECTIOUS DISEASES

Detection of Mycobacterium chelonae, Mycobacterium abscessus Group, and Mycobacterium fortuitum Complex by a Multiplex Real-Time PCR Directly from Clinical Samples Using the BD MAX System

(2017) Talita T. Rocchetti et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium

(2016) Josephine M. Bryant et al.   SCIENCE

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Mycobacteriophage SWU1 gp39 can potentiate multiple antibiotics against Mycobacterium via altering the cell wall permeability

(2016) Qiming Li et al.   Scientific Reports

Chronic pulmonary disease withMycobacterium abscessuscomplex is a biofilm infection

(2015) Tavs Qvist et al.   EUROPEAN RESPIRATORY JOURNAL

Epidemiology of nontuberculous mycobacteria among patients with cystic fibrosis in Scandinavia

(2015) Tavs Qvist et al.   Journal of Cystic Fibrosis

A consensus document for the selection of lung transplant candidates: 2014—An update from the Pulmonary Transplantation Council of the International Society for Heart and Lung Transplantation

(2015) David Weill et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

US Cystic Fibrosis Foundation and European Cystic Fibrosis Society consensus recommendations for the management of non-tuberculous mycobacteria in individuals with cystic fibrosis

(2015) R Andres Floto et al.   THORAX

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Genome Sequencing of Mycobacterium abscessus Isolates from Patients in the United States and Comparisons to Globally Diverse Clinical Strains

(2014) R. M. Davidson et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Cystic Fibrosis Pulmonary Guidelines

(2013) Peter J. Mogayzel et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Molecular Longitudinal Tracking of Mycobacterium abscessus spp. during Chronic Infection of the Human Lung

(2013) Kaj M. Kreutzfeldt et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

On the nature of mycobacteriophage diversity and host preference

(2012) Deborah Jacobs-Sera et al.   VIROLOGY

Mycobacterium smegmatis RNase J is a 5′-3′ exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation

(2011) Valerio Taverniti et al.   MOLECULAR MICROBIOLOGY

Yersinia pseudotuberculosis mntH functions in intracellular manganese accumulation, which is essential for virulence and survival in cells expressing functional Nramp1

(2010) O. L. Champion et al.   MICROBIOLOGY-SGM

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS