Inferring population structure in biobank-scale genomic data

Estimating FST and kinship for arbitrary population structures

(2021) Alejandro Ochoa et al.   PLoS Genetics

Identity-by-descent detection across 487,409 British samples reveals fine scale population structure and ultra-rare variant associations

(2020) Juba Nait Saada et al.   Nature Communications

A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis

(2019) Irineo Cabreros et al.   GENETICS

FEAST: fast expectation-maximization for microbial source tracking

(2019) Liat Shenhav et al.   NATURE METHODS

Inferring whole-genome histories in large population datasets

(2019) Jerome Kelleher et al.   NATURE GENETICS

UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts

(2019) Alex Diaz-Papkovich et al.   PLoS Genetics

The UK Biobank resource with deep phenotyping and genomic data

(2018) Clare Bycroft et al.   NATURE

pong: fast analysis and visualization of latent clusters in population genetic data

(2016) Aaron A. Behr et al.   BIOINFORMATICS

Genie: A new, fast, and outlier-resistant hierarchical clustering algorithm

(2016) Marek Gagolewski et al.   INFORMATION SCIENCES

Million Veteran Program: A mega-biobank to study genetic influences on health and disease

(2016) John Michael Gaziano et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Scaling probabilistic models of genetic variation to millions of humans

(2016) Prem Gopalan et al.   NATURE GENETICS

Second-generation PLINK: rising to the challenge of larger and richer datasets

(2015) Christopher C Chang et al.   GigaScience

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Inference of Population Structure using Dense Haplotype Data

(2012) Daniel John Lawson et al.   PLoS Genetics

Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions

(2011) N. Halko et al.   SIAM REVIEW

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Mailman algorithm: A note on matrix–vector multiplication

(2008) Edo Liberty et al.   INFORMATION PROCESSING LETTERS

Genes mirror geography within Europe

(2008) John Novembre et al.   NATURE

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE