CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research
出版年份 2021 全文链接
标题
CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research
作者
关键词
-
出版物
Plants-Basel
Volume 10, Issue 12, Pages 2805
出版商
MDPI AG
发表日期
2021-12-20
DOI
10.3390/plants10122805
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Comparative genome analyses highlight transposon-mediated genome expansion and the evolutionary architecture of 3D genomic folding in cotton
- (2021) Maojun Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- The Gossypium stocksii genome as a novel resource for cotton improvement
- (2021) Corrinne E Grover et al. G3-Genes Genomes Genetics
- Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence
- (2021) Zhaoen Yang et al. BMC BIOLOGY
- Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases
- (2021) Margaret Staton et al. BRIEFINGS IN BIOINFORMATICS
- The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility
- (2021) Corrinne E Grover et al. G3-Genes Genomes Genetics
- The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution
- (2020) Corrinne E. Grover et al. G3-Genes Genomes Genetics
- Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
- (2020) Gai Huang et al. NATURE GENETICS
- Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
- (2020) Z. Jeffrey Chen et al. NATURE GENETICS
- Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton
- (2019) Yan Hu et al. NATURE GENETICS
- Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
- (2019) Zhaoen Yang et al. Nature Communications
- Genome sequencing of the Australian wild diploid species Gossypium australe highlights disease resistance and delayed gland morphogenesis
- (2019) Yingfan Cai et al. PLANT BIOTECHNOLOGY JOURNAL
- De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri
- (2019) Joshua A. Udall et al. G3-Genes Genomes Genetics
- The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants
- (2019) Joshua A. Udall et al. Frontiers in Plant Science
- Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits
- (2018) Xiongming Du et al. NATURE GENETICS
- AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
- (2018) Lisa Harper et al. Database-The Journal of Biological Databases and Curation
- Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing
- (2018) Corrinne E Grover et al. Genome Biology and Evolution
- Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense
- (2018) Maojun Wang et al. NATURE GENETICS
- GenBank
- (2018) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
- (2017) Laurel Cooper et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants
- (2017) Pascal Schläpfer et al. PLANT PHYSIOLOGY
- New extension software modules to enhance searching and display of transcriptome data in Tripal databases
- (2017) Ming Chen et al. Database-The Journal of Biological Databases and Curation
- Genetic Analysis and QTL Detection on Fiber Traits Using Two Recombinant Inbred Lines and Their Backcross Populations in Upland Cotton
- (2016) Lianguang Shang et al. G3-Genes Genomes Genetics
- Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution
- (2015) Fuguang Li et al. NATURE BIOTECHNOLOGY
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- KEGG as a reference resource for gene and protein annotation
- (2015) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.
- (2015) A. M. Hulse-Kemp et al. G3-Genes Genomes Genetics
- The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres
- (2015) Daojun Yuan et al. Scientific Reports
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Field Book: An Open-Source Application for Field Data Collection on Android
- (2014) Trevor W. Rife et al. CROP SCIENCE
- Genome sequence of the cultivated cotton Gossypium arboreum
- (2014) Fuguang Li et al. NATURE GENETICS
- Linkage Map Construction and Quantitative Trait Locus Analysis of Agronomic and Fiber Quality Traits in Cotton
- (2014) Michael A. Gore et al. Plant Genome
- The challenge of constructing, classifying, and representing metabolic pathways
- (2013) Ron Caspi et al. FEMS MICROBIOLOGY LETTERS
- CottonGen: a genomics, genetics and breeding database for cotton research
- (2013) Jing Yu et al. NUCLEIC ACIDS RESEARCH
- Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases
- (2013) Lacey-Anne Sanderson et al. Database-The Journal of Biological Databases and Curation
- Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing
- (2013) Justin T. Page et al. G3-Genes Genomes Genetics
- PolyCat: A Resource for Genome Categorization of Sequencing Reads From Allopolyploid Organisms
- (2013) Justin T. Page et al. G3-Genes Genomes Genetics
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
- (2012) Andrew H. Paterson et al. NATURE
- The draft genome of a diploid cotton Gossypium raimondii
- (2012) Kunbo Wang et al. NATURE GENETICS
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- InterPro in 2011: new developments in the family and domain prediction database
- (2011) S. Hunter et al. NUCLEIC ACIDS RESEARCH
- Tripal: a construction toolkit for online genome databases
- (2011) S. P. Ficklin et al. Database-The Journal of Biological Databases and Curation
- Evolution of the Sequence Ontology terms and relationships
- (2010) Christopher J. Mungall et al. JOURNAL OF BIOMEDICAL INFORMATICS
- Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature
- (2010) Rosemary Shrestha et al. AoB Plants
- CMap 1.01: a comparative mapping application for the Internet
- (2009) K. Youens-Clark et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
- (2008) Michel Schneider et al. Journal of Proteomics
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