Genome sequencing of the Australian wild diploid species Gossypium australe highlights disease resistance and delayed gland morphogenesis

Population genomics demystifies the defoliation phenotype in the plant pathogen Verticillium dahliae

(2019) Dan-Dan Zhang et al.   NEW PHYTOLOGIST

Overexpression of Loose Plant Architecture 1 increases planting density and resistance to sheath blight disease via activation of PIN-FORMED 1a in rice

(2019) Qian Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

The Cotton Apoplastic Protein CRR1 Stabilizes Chitinase 28 to Facilitate Defense Against the Fungal Pathogen Verticillium dahliae

(2019) Li-Bo Han et al.   PLANT CELL

Suppression of tryptophan synthase activates cotton immunity by triggering cell death via promoting SA synthesis

(2019) Yuhuan Miao et al.   PLANT JOURNAL

A reference-grade wild soybean genome

(2019) Min Xie et al.   Nature Communications

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Resistance gene cloning from a wild crop relative by sequence capture and association genetics

(2019) Sanu Arora et al.   NATURE BIOTECHNOLOGY

Functional analysis of the GbDWARF14 gene associated with branching development in cotton

(2019) Ping Wang et al.   PeerJ

Inducement and identification of chromosome introgression and translocation of Gossypium australe on Gossypium hirsutum

(2018) Yingying Wang et al.   BMC GENOMICS

Ten alien chromosome additions of Gossypium hirsutum–Gossypium bickii developed by integrative uses of GISH and species-specific SSR markers

(2018) Dong Tang et al.   MOLECULAR GENETICS AND GENOMICS

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

(2018) Qiang Zhao et al.   NATURE GENETICS

Quantitative Trait Loci Mapping of Multiple Independent Loci for Resistance to Fusarium oxysporum f. sp. vasinfectum Races 1 and 4 in an Interspecific Cotton Population

(2018) Congli Wang et al.   PHYTOPATHOLOGY

GbSOBIR1 confers Verticillium wilt resistance by phosphorylating the transcriptional factor GbbHLH171 in Gossypium barbadense

(2018) Yi Zhou et al.   PLANT BIOTECHNOLOGY JOURNAL

Different Modes of Negative Regulation of Plant Immunity by Calmodulin-Related Genes

(2018) You Lu et al.   PLANT PHYSIOLOGY

Characterization of gossypol biosynthetic pathway

(2018) Xiu Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling

(2018) Shiyong Sun et al.   Nature Communications

The plant-specific transcription factors CBP60g and SARD1 are targeted by a Verticillium secretory protein VdSCP41 to modulate immunity

(2018) Jun Qin et al.   eLife

Wild Relatives of Maize, Rice, Cotton, and Soybean: Treasure Troves for Tolerance to Biotic and Abiotic Stresses

(2018) Jafar Mammadov et al.   Frontiers in Plant Science

A single transcription factor promotes both yield and immunity in rice

(2018) Jing Wang et al.   SCIENCE

Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica

(2018) Timothy Paape et al.   Nature Communications

Genebank genomics highlights the diversity of a global barley collection

(2018) Sara G. Milner et al.   NATURE GENETICS

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

(2018) Evgenia V Kriventseva et al.   NUCLEIC ACIDS RESEARCH

Genes regulating gland development in the cotton plant

(2018) Madhusudhana R. Janga et al.   PLANT BIOTECHNOLOGY JOURNAL

Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing

(2017) Corrinne E Grover et al.   Genome Biology and Evolution

MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

(2017) Chuan-Le Xiao et al.   NATURE METHODS

Strigolactone biosynthesis is evolutionarily conserved, regulated by phosphate starvation and contributes to resistance against phytopathogenic fungi in a moss, Physcomitrella patens

(2017) Eva L. Decker et al.   NEW PHYTOLOGIST

TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1 ) and CALMODULIN-BINDING PROTEIN 60g (CBP60g )

(2017) Tongjun Sun et al.   NEW PHYTOLOGIST

Long noncoding RNAs involve in resistance to Verticillium dahliae , a fungal disease in cotton

(2017) Lin Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

De Novo Assembly of a NewSolanum pennelliiAccession Using Nanopore Sequencing

(2017) Maximilian H.-W. Schmidt et al.   PLANT CELL

Plant Glandular Trichomes: Natural Cell Factories of High Biotechnological Interest

(2017) Alexandre Huchelmann et al.   PLANT PHYSIOLOGY

Laccase GhLac1 Modulates Broad-Spectrum Biotic Stress Tolerance via Manipulating Phenylpropanoid Pathway and Jasmonic Acid Synthesis

(2017) Qin Hu et al.   PLANT PHYSIOLOGY

Arabidopsisglycosylphosphatidylinositol-anchored protein LLG1 associates with and modulates FLS2 to regulate innate immunity

(2017) Qiujing Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biological fabrication of cellulose fibers with tailored properties

(2017) Filipe Natalio et al.   SCIENCE

Glutathione in plants: biosynthesis and physiological role in environmental stress tolerance

(2017) Mirza Hasanuzzaman et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Vitamins for enhancing plant resistance

(2016) Hatem Boubakri et al.   PLANTA

Fine mapping and candidate gene analysis of the dominant glandless gene Gl 2 e in cotton (Gossypium spp.)

(2016) Hailiang Cheng et al.   THEORETICAL AND APPLIED GENETICS

Genetic basis for glandular trichome formation in cotton

(2016) Dan Ma et al.   Nature Communications

Identification and evidence of positive selection upon resistance gene analogs in cotton (Gossypium hirsutum L.)

(2016) Antonios Zambounis et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

To Be a Flower or Fruiting Branch: Insights Revealed by mRNA and Small RNA Transcriptomes from Different Cotton Developmental Stages

(2016) Quan Sun et al.   Scientific Reports

The F-box protein MAX2 contributes to resistance to bacterial phytopathogens in Arabidopsis thaliana

(2015) Maria Piisilä et al.   BMC PLANT BIOLOGY

Suppression of the homeobox geneHDTF1enhances resistance toVerticillium dahliaeandBotrytis cinereain cotton

(2015) Wei Gao et al.   Journal of Integrative Plant Biology

Comparative analysis of resistance gene analogues encoding NBS-LRR domains in cotton

(2015) Abdul Manan Khan et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

(2015) Fuguang Li et al.   NATURE BIOTECHNOLOGY

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

Genomics of crop wild relatives: expanding the gene pool for crop improvement

(2015) Marta Brozynska et al.   PLANT BIOTECHNOLOGY JOURNAL

Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid

(2015) Xiao-yu Zheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Synthetic Allotetraploid (A1A1G2G2) between Gossypium herbaceum and G. australe: Bridging for Simultaneously Transferring Favorable Genes from These Two Diploid Species into Upland Cotton

(2015) Quan Liu et al.   PLoS One

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

(2014) Suhas S.P. Rao et al.   CELL

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Construction of a complete set of alien chromosome addition lines from Gossypium australe in Gossypium hirsutum: morphological, cytological, and genotypic characterization

(2014) Yu Chen et al.   THEORETICAL AND APPLIED GENETICS

Analysis of sea-island cotton and upland cotton in response to Verticillium dahliae infection by RNA sequencing

(2013) Quan Sun et al.   BMC GENOMICS

Proteomic and Virus-induced Gene Silencing (VIGS) Analyses Reveal That Gossypol, Brassinosteroids, and Jasmonic acid Contribute to the Resistance of Cotton toVerticillium dahliae

(2013) Wei Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

Do strigolactones contribute to plant defence?

(2013) Rocío Torres-Vera et al.   MOLECULAR PLANT PATHOLOGY

Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

(2013) Joshua N Burton et al.   NATURE BIOTECHNOLOGY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

Paleocene Malvaceae from northern South America and their biogeographical implications

(2011) Mónica R. Carvalho et al.   AMERICAN JOURNAL OF BOTANY

Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry

(2011) Li Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Down-regulation of free riboflavin content induces hydrogen peroxide and a pathogen defense in Arabidopsis

(2011) Benliang Deng et al.   PLANT MOLECULAR BIOLOGY

Diversity at theMlaPowdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection

(2010) Sabine Seeholzer et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Glandless seed and glanded plant research in cotton. A review

(2009) Yingfan Cai et al.   Agronomy for Sustainable Development

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

Expression of the “glanded-plant and glandless-seed” trait of Australian diploid cottons in different genetic backgrounds

(2008) Halima Benbouza et al.   EUPHYTICA

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE