Reduced Virulence and Enhanced Host Adaption during Antibiotics Therapy: a Story of a Within-Host Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 Evolution in a Patient with a Serious Scrotal Abscess

Molecular and clinical epidemiology of carbapenem-resistant Enterobacterales in the USA (CRACKLE-2): a prospective cohort study

(2020) David van Duin et al.   LANCET INFECTIOUS DISEASES

Structural and mechanistic basis of capsule O-acetylation in Neisseria meningitidis serogroup A

(2020) Timm Fiebig et al.   Nature Communications

RamA upregulates multidrug resistance efflux pumps AcrAB and OqxAB in Klebsiella pneumoniae

(2020) Qingqing Xu et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Deletion of D-Lactate Dehydrogenase A in Neisseria meningitidis Promotes Biofilm Formation Through Increased Autolysis and Extracellular DNA Release

(2019) Sara Sigurlásdóttir et al.   Frontiers in Microbiology

Within-Host Adaptation Mediated by Intergenic Evolution in Pseudomonas aeruginosa

(2019) S M Hossein Khademi et al.   Genome Biology and Evolution

Efflux pumps AcrAB and OqxAB contribute to nitrofurantoin resistance in an uropathogenic Klebsiella pneumoniae isolate

(2019) Qingqing Xu et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Evolution of Outbreak-Causing Carbapenem-Resistant Klebsiella pneumoniae ST258 at a Tertiary Care Hospital over 8 Years

(2019) Jane W. Marsh et al.   mBio

A 4.5-Year Within-Patient Evolution of a Colistin-Resistant Klebsiella pneumoniae Carbapenemase–Producing K. pneumoniae Sequence Type 258

(2018) Agnès B Jousset et al.   CLINICAL INFECTIOUS DISEASES

In vivo evolution of resistant subpopulations of KPC-producing Klebsiella pneumoniae during ceftazidime/avibactam treatment

(2018) Paolo Gaibani et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study

(2018) Danxia Gu et al.   LANCET INFECTIOUS DISEASES

Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis

(2018) Evelina Tacconelli et al.   LANCET INFECTIOUS DISEASES

MUMmer4: A fast and versatile genome alignment system

(2018) Guillaume Marçais et al.   PLoS Computational Biology

In vivo development of tigecycline resistance in Klebsiella pneumoniae owing to deletion of the ramR ribosomal binding site

(2017) Meiping Ye et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Occurrence of carbapenemase-producing Klebsiella pneumoniae and Escherichia coli in the European survey of carbapenemase-producing Enterobacteriaceae (EuSCAPE): a prospective, multinational study

(2017) Hajo Grundmann et al.   LANCET INFECTIOUS DISEASES

Resistance of hypervirulent Klebsiella pneumoniae to both intracellular and extracellular killing of neutrophils

(2017) Lifeng Wang et al.   PLoS One

Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland

(2017) Danesh Moradigaravand et al.   mBio

Nationwide Surveillance of Clinical Carbapenem-resistant Enterobacteriaceae (CRE) Strains in China

(2017) Rong Zhang et al.   EBioMedicine

Tigecycline resistance among carbapenem-resistant Klebsiella Pneumoniae: Clinical characteristics and expression levels of efflux pump genes

(2017) Sheng-Kang Chiu et al.   PLoS One

Within-host evolution of bacterial pathogens

(2016) Xavier Didelot et al.   NATURE REVIEWS MICROBIOLOGY

Identification of a capsular variant and characterization of capsular acetylation in Klebsiella pneumoniae PLA-associated type K57

(2016) Chun-Ru Hsu et al.   Scientific Reports

Epidemic potential ofEscherichia coliST131 andKlebsiella pneumoniaeST258: a systematic review and meta-analysis

(2016) M J D Dautzenberg et al.   BMJ Open

Clinical and Genomic Analysis of Liver Abscess-Causing Klebsiella pneumoniae Identifies New Liver Abscess-Associated Virulence Genes

(2016) Meiping Ye et al.   Frontiers in Cellular and Infection Microbiology

Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

(2016) Elizabeth J. Klemm et al.   Nature Microbiology

Klebsiella pneumoniae Carbapenemase (KPC)-Producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole-Genome Sequencing

(2015) Amy J. Mathers et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation

(2015) Shyamasree De Majumdar et al.   PLoS Pathogens

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

(2014) Rasmus Lykke Marvig et al.   NATURE GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

OmpK26, a Novel Porin Associated with Carbapenem Resistance in Klebsiella pneumoniae

(2011) Laura García-Sureda et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Structure and Immunological Characterization of the Capsular Polysaccharide of a Pyrogenic Liver Abscess Caused byKlebsiella pneumoniae

(2011) Feng-Ling Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

RamA, a Member of the AraC/XylS Family, Influences Both Virulence and Efflux in Salmonella enterica Serovar Typhimurium

(2010) A. M. Bailey et al.   JOURNAL OF BACTERIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

O-acetyltransferase geneneuOis segregated according to phylogenetic background and contributes to environmental desiccation resistance inEscherichia coliK1

(2009) Ines L. Mordhorst et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic and biochemical modulation of sialic acid O-acetylation on group B Streptococcus: Phenotypic and functional impact

(2009) S. Weiman et al.   GLYCOBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans

(2008) Stephan Herget et al.   BMC STRUCTURAL BIOLOGY