Within-Host Adaptation Mediated by Intergenic Evolution in Pseudomonas aeruginosa

Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene

(2019) Otmane Lamrabet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intergenic evolution during host adaptation increases expression of the metallophore pseudopaline in Pseudomonas aeruginosa

(2018) Grith Miriam Maigaard Hermansen et al.   MICROBIOLOGY-SGM

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species

(2017) Harry A. Thorpe et al.   GENETICS

Growth of Pseudomonas aeruginosa in zinc poor environments is promoted by a nicotianamine-related metallophore

(2017) Maria Chiara Mastropasqua et al.   MOLECULAR MICROBIOLOGY

RelA Mutant Enterococcus faecium with Multiantibiotic Tolerance Arising in an Immunocompromised Host

(2017) Erin S. Honsa et al.   mBio

History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment

(2017) Phillip Yen et al.   PLOS BIOLOGY

Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species

(2017) Harry A. Thorpe et al.   GENETICS

Pseudomonas aeruginosa zinc uptake in chelating environment is primarily mediated by the metallophore pseudopaline

(2017) Sébastien Lhospice et al.   Scientific Reports

Within-host evolution of bacterial pathogens

(2016) Xavier Didelot et al.   NATURE REVIEWS MICROBIOLOGY

Natural mutations in aStaphylococcus aureusvirulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation

(2016) Sudip Das et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

(2016) Alan McNally et al.   PLoS Genetics

Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host

(2016) Elizabeth J. Klemm et al.   Nature Microbiology

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Long-term social dynamics drive loss of function in pathogenic bacteria

(2015) Sandra Breum Andersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum

(2015) Keith H. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Constitutive production of c-di-GMP is associated with mutations in a variant ofPseudomonas aeruginosawith altered membrane composition

(2015) Andrea Blanka et al.   Science Signaling

A novel siderophore system is essential for the growth of Pseudomonas aeruginosa in airway mucus

(2015) Mia Gi et al.   Scientific Reports

Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk

(2015) Sebastian Schulz et al.   PLoS Pathogens

Constitutive production of c-di-GMP is associated with mutations in a variant ofPseudomonas aeruginosawith altered membrane composition

(2015) Andrea Blanka et al.   Science Signaling

Mutations in theembC-embAIntergenic Region Contribute to Mycobacterium tuberculosis Resistance to Ethambutol

(2014) Zhenling Cui et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Expression of antisense small RNAs in response to stress in Pseudomonas aeruginosa

(2014) María Gómez-Lozano et al.   BMC GENOMICS

Role of Pseudomonas aeruginosa AmpR on  -lactam and non- -lactam transient cross-resistance upon pre-exposure to subinhibitory concentrations of antibiotics

(2014) H. Kumari et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis

(2014) Rasmus Lykke Marvig et al.   NATURE GENETICS

Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients

(2014) Julie Jeukens et al.   PLoS One

The predictability of molecular evolution during functional innovation

(2014) D. Blank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Within-Host Evolution of Pseudomonas aeruginosa Reveals Adaptation toward Iron Acquisition from Hemoglobin

(2014) R. L. Marvig et al.   mBio

Detection of Host-Derived Sphingosine by Pseudomonas aeruginosa Is Important for Survival in the Murine Lung

(2014) Annette E. LaBauve et al.   PLoS Pathogens

Regulatory evolution at the host–pathogen interface

(2013) Brian K. Coombes   CANADIAN JOURNAL OF MICROBIOLOGY

CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria

(2013) Sefa Kılıç et al.   NUCLEIC ACIDS RESEARCH

Genome Analysis of a Transmissible Lineage of Pseudomonas aeruginosa Reveals Pathoadaptive Mutations and Distinct Evolutionary Paths of Hypermutators

(2013) Rasmus Lykke Marvig et al.   PLoS Genetics

Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa

(2012) María Gómez-Lozano et al.   ENVIRONMENTAL MICROBIOLOGY

Polysaccharides serve as scaffold of biofilms formed by mucoidPseudomonas aeruginosa

(2012) Liang Yang et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Why Transcription Factor Binding Sites Are Ten Nucleotides Long

(2012) A. J. Stewart et al.   GENETICS

Genomic Variation among Contemporary Pseudomonas aeruginosa Isolates from Chronically Infected Cystic Fibrosis Patients

(2012) Jade C. S. Chung et al.   JOURNAL OF BACTERIOLOGY

Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective

(2012) Anders Folkesson et al.   NATURE REVIEWS MICROBIOLOGY

Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling

(2012) Donghyuk Kim et al.   PLoS Genetics

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

(2011) Nina Cramer et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function

(2009) S. E. Osborne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS

(2009) Daniel M. Stoebel et al.   PLoS Genetics

Pseudomonas aeruginosa lasR mutants are associated with cystic fibrosis lung disease progression

(2008) Lucas R. Hoffman et al.   Journal of Cystic Fibrosis

An Indigenous Posttranscriptional Modification in the Ribosomal Peptidyl Transferase Center Confers Resistance to an Array of Protein Synthesis Inhibitors

(2008) Seok-Ming Toh et al.   JOURNAL OF MOLECULAR BIOLOGY