Cryo-EM single-particle structure refinement and map calculation using Servalcat

The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP

(2021) Grzegorz Chojnowski et al.   Acta Crystallographica Section D-Structural Biology

The missing link: covalent linkages in structural models

(2021) Robert A. Nicholls et al.   Acta Crystallographica Section D-Structural Biology

Cryo-EM performance testing of hardware and data acquisition strategies

(2021) Radostin Danev et al.   Microscopy

Cryo-EM structure of SARS-CoV-2 ORF3a in lipid nanodiscs

(2021) David M. Kern et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps

(2020) Agnel Praveen Joseph et al.   Journal of Chemical Information and Modeling

Measurement of atom resolvability in cryo-EM maps with Q-scores

(2020) Grigore Pintilie et al.   NATURE METHODS

Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM

(2020) Soon Wen Hoh et al.   Acta Crystallographica Section D-Structural Biology

Electron-event representation data enable efficient cryoEM file storage with full preservation of spatial and temporal resolution

(2020) Hui Guo et al.   IUCrJ

Assessing the JEOL CRYO ARM 300 for high-throughput automated single-particle cryo-EM in a multiuser environment

(2020) Marcus Fislage et al.   IUCrJ

Cryo-EM structures of calcium homeostasis modulator channels in diverse oligomeric assemblies

(2020) Kanae Demura et al.   Science Advances

Single-particle cryo-EM at atomic resolution

(2020) Takanori Nakane et al.   NATURE

Atomic-resolution protein structure determination by cryo-EM

(2020) Ka Man Yip et al.   NATURE

Density modification of cryo-EM maps

(2020) Thomas C. Terwilliger et al.   Acta Crystallographica Section D-Structural Biology

Through-grid wicking enables high-speed cryoEM specimen preparation

(2020) Yong Zi Tan et al.   Acta Crystallographica Section D-Structural Biology

TEMPy2: a Python library with improved 3D electron microscopy density-fitting and validation workflows

(2020) Tristan Cragnolini et al.   Acta Crystallographica Section D-Structural Biology

Cryo-Electron Microscopy Methodology: Current Aspects and Future Directions

(2019) Radostin Danev et al.   TRENDS IN BIOCHEMICAL SCIENCES

CryoTEM with a Cold Field Emission Gun That Moves Structural Biology into a New Stage

(2019) Takayuki Kato et al.   MICROSCOPY AND MICROANALYSIS

Analysis of Global and Site-Specific Radiation Damage in Cryo-EM

(2018) Johan Hattne et al.   STRUCTURE

Electron diffraction and three-dimensional crystallography for structural biology

(2018) Max T. B. Clabbers et al.   Crystallography Reviews

Automated map sharpening by maximization of detail and connectivity

(2018) Thomas C. Terwilliger et al.   Acta Crystallographica Section D-Structural Biology

Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM

(2018) Robert A. Nicholls et al.   Acta Crystallographica Section D-Structural Biology

Real-space refinement in PHENIX for cryo-EM and crystallography

(2018) Pavel V. Afonine et al.   Acta Crystallographica Section D-Structural Biology

A Local Agreement Filtering Algorithm for Transmission EM Reconstructions

(2018) Kailash Ramlaul et al.   JOURNAL OF STRUCTURAL BIOLOGY

A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps

(2018) Thomas C. Terwilliger et al.   NATURE METHODS

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

Helical reconstruction in RELION

(2017) Shaoda He et al.   JOURNAL OF STRUCTURAL BIOLOGY

MolProbity: More and better reference data for improved all-atom structure validation

(2017) Christopher J. Williams et al.   PROTEIN SCIENCE

Model-based local density sharpening of cryo-EM maps

(2017) Arjen J Jakobi et al.   eLife

Recent developments in the CCP-EM software suite

(2017) Tom Burnley et al.   Acta Crystallographica Section D-Structural Biology

`Atomic resolution': a badly abused term in structural biology

(2017) Alexander Wlodawer et al.   Acta Crystallographica Section D-Structural Biology

Structural characterization of ribosome recruitment and translocation by type IV IRES

(2016) Jason Murray et al.   eLife

How cryo-EM is revolutionizing structural biology

(2015) Xiao-chen Bai et al.   TRENDS IN BIOCHEMICAL SCIENCES

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

(2015) Alan Brown et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Statistical quality indicators for electron-density maps

(2012) Ian J. Tickle   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PDB_REDO: constructive validation, more than just looking for errors

(2012) Robbie P. Joosten et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Low-resolution refinement tools inREFMAC5

(2012) Robert A. Nicholls et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

REFMAC5 for the refinement of macromolecular crystal structures

(2011) Garib N. Murshudov et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Molecular replacement withMOLREP

(2009) Alexei Vagin et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY