Pattern of New Gene Origination in a Special Fish Lineage, the Flatfishes

The Genomes of Two Billfishes Provide Insights into the Evolution of Endothermy in Teleosts

(2021) Baosheng Wu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large-scale sequencing of flatfish genomes provides insights into the polyphyletic origin of their specialized body plan

(2021) Zhenming Lü et al.   NATURE GENETICS

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

(2020) Romain Feron et al.   Molecular Ecology Resources

NLRC3 inhibits PDGF‐induced PASMCs proliferation via PI3K‐mTOR pathway

(2020) Li‐huang Zha et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Whole genome-wide chromosome fusion and new gene birth in the Monopterus albus genome

(2020) Yibin Cheng et al.   Cell and Bioscience

Rapture‐ready darters: choice of reference genome and genotyping method (whole‐genome or sequence capture) influence population genomic inference in Etheostoma

(2020) Brendan N. Reid et al.   Molecular Ecology Resources

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

(2019) Yi Shao et al.   GENOME RESEARCH

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

TRIM25 enhances cell growth and cell survival by modulating p53 signals via interaction with G3BP2 in prostate cancer

(2018) Ken-ichi Takayama et al.   ONCOGENE

New Genes and Functional Innovation in Mammals

(2017) José Luis Villanueva-Cañas et al.   Genome Biology and Evolution

Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

(2016) Antonio Figueras et al.   DNA RESEARCH

The genome and transcriptome of Japanese flounder provide insights into flatfish asymmetry

(2016) Changwei Shao et al.   NATURE GENETICS

The systematics and evolution of New World primates – A review

(2015) Horacio Schneider et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

New genes contribute to genetic and phenotypic novelties in human evolution

(2014) Yong E Zhang et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Gene duplication as a major force in evolution

(2013) SANTOSHKUMAR MAGADUM et al.   JOURNAL OF GENETICS

Identification of a Novel Gig2 Gene Family Specific to Non-Amniote Vertebrates

(2013) Yi-Bing Zhang et al.   PLoS One

New genes expressed in human brains: Implications for annotating evolving genomes

(2012) Yong E. Zhang et al.   BIOESSAYS

Newly evolved genes: Moving from comparative genomics to functional studies in model systems

(2012) José M. Ranz et al.   BIOESSAYS

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

(2012) Jianguo Lu et al.   BMC GENOMICS

ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin

(2012) John A. Capra et al.   PLoS Computational Biology

Gene expression profiling of peripheral blood leukocytes identifies potential novel biomarkers of chronic obstructive pulmonary disease in current and former smokers

(2010) Jeffery S. Edmiston et al.   BIOMARKERS

Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa

(2010) Tomislav Domazet-Lošo et al.   BMC BIOLOGY

Involvement of the Hipk family in regulation of eyeball size, lens formation and retinal morphogenesis

(2010) Toshihiro Inoue et al.   FEBS LETTERS

Age-dependent chromosomal distribution of male-biased genes in Drosophila

(2010) Y. E. Zhang et al.   GENOME RESEARCH

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome

(2010) Yong E. Zhang et al.   PLOS BIOLOGY

On the origin of new genes in Drosophila

(2008) Q. Zhou et al.   GENOME RESEARCH

The evolutionary origin of flatfish asymmetry

(2008) Matt Friedman   NATURE