GRAND: An Integrated Genome, Transcriptome Resources, and Gene Network Database for Gossypium

Cotton D genome assemblies built with long-read data unveil mechanisms of centromere evolution and stress tolerance divergence

(2021) Zhaoen Yang et al.   BMC BIOLOGY

Gossypium tomentosum genome and interspecific ultra-dense genetic maps reveal genomic structures, recombination landscape and flowering depression in cotton

(2021) Chao Shen et al.   GENOMICS

The Gossypium anomalum genome as a resource for cotton improvement and evolutionary analysis of hybrid incompatibility

(2021) Corrinne E Grover et al.   G3-Genes Genomes Genetics

CottonGVD: A Comprehensive Genomic Variation Database for Cultivated Cottons

(2021) Zhen Peng et al.   Frontiers in Plant Science

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

(2020) Corrinne E. Grover et al.   G3-Genes Genomes Genetics

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution

(2020) Gai Huang et al.   NATURE GENETICS

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

(2020) Z. Jeffrey Chen et al.   NATURE GENETICS

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

(2019) Zhaoen Yang et al.   Nature Communications

Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases

(2019) Anurag Priyam et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequencing of the Australian wild diploid species Gossypium australe highlights disease resistance and delayed gland morphogenesis

(2019) Yingfan Cai et al.   PLANT BIOTECHNOLOGY JOURNAL

De Novo Genome Sequence Assemblies of Gossypium raimondii and Gossypium turneri

(2019) Joshua A. Udall et al.   G3-Genes Genomes Genetics

MaGenDB: a functional genomics hub for Malvaceae plants

(2019) Dehe Wang et al.   NUCLEIC ACIDS RESEARCH

Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits

(2018) Xiongming Du et al.   NATURE GENETICS

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

CRISPR-GE: A Convenient Software Toolkit for CRISPR-Based Genome Editing

(2017) Xianrong Xie et al.   Molecular Plant

ccNET: Database of co-expression networks with functional modules for diploid and polyploidGossypium

(2016) Qi You et al.   NUCLEIC ACIDS RESEARCH

CottonGen: a genomics, genetics and breeding database for cotton research

(2013) Jing Yu et al.   NUCLEIC ACIDS RESEARCH

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS