Characterization of IncHI1B Plasmids Encoding Efflux Pump TmexCD2-ToprJ2 in Carbapenem-Resistant Klebsiella variicola, Klebsiella quasipneumoniae, and Klebsiella michiganensis Strains

Characterization of an IncFIB/IncHI1B plasmid encoding efflux pump TMexCD1-TOprJ1 in a clinical tigecycline and carbapenem-resistant Klebsiella pneumoniae strain

(2021) Xuemei Yang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Novel transferable resistance-nodulation-division pump gene cluster tmexCD2-toprJ2 that confers tigecycline resistance in Raoultella ornithinolytica

(2021) Cheng-Zhen Wang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Emergence of a plasmid-borne tigecycline resistance in Klebsiella pneumoniae in Vietnam

(2021) Aki Hirabayashi et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Characterization of TMexCD3-TOprJ3, an RND-type efflux system conferring resistance to tigecycline in Proteus mirabilis, and its associated Integrative Conjugative Element

(2021) Qian Wang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Apramycin resistance in epidemic carbapenem-resistant Klebsiella pneumoniae ST258 strains

(2021) Mingju Hao et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

(2021) Margaret M. C. Lam et al.   Nature Communications

Population genomics of Klebsiella pneumoniae

(2020) Kelly L. Wyres et al.   NATURE REVIEWS MICROBIOLOGY

Emergence of a Plasmid-Encoded Resistance-Nodulation-Division Efflux Pump Conferring Resistance to Multiple Drugs, Including Tigecycline, in Klebsiella pneumoniae

(2020) Luchao Lv et al.   mBio

Identification of novel tetracycline resistance gene tet(X14) and its co-occurrence with tet(X2) in a tigecycline-resistant and colistin-resistant Empedobacter stercoris

(2020) Yingying Cheng et al.   Emerging Microbes & Infections

IS26 mediate the acquisition of tigecycline resistance gene cluster tmexCD1-toprJ1 by IncHI1B-FIB plasmids in Klebsiella pneumoniae and Klebsiella quasipneumoniae from food market sewage

(2020) Miao Wan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Assembly of long, error-prone reads using repeat graphs

(2019) Mikhail Kolmogorov et al.   NATURE BIOTECHNOLOGY

Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans

(2019) Tao He et al.   Nature Microbiology

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli

(2019) Jian Sun et al.   Nature Microbiology

Fast and accurate de novo genome assembly from long uncorrected reads

(2017) Robert Vaser et al.   GENOME RESEARCH

Sequencing of blaIMP-Carrying IncN2 Plasmids, and Comparative Genomics of IncN2 Plasmids Harboring Class 1 Integrons

(2017) Xiaoyuan Jiang et al.   Frontiers in Cellular and Infection Microbiology

Tigecycline resistance among carbapenem-resistant Klebsiella Pneumoniae: Clinical characteristics and expression levels of efflux pump genes

(2017) Sheng-Kang Chiu et al.   PLoS One

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Tetracycline Antibiotics and Resistance

(2016) Trudy H. Grossman   Cold Spring Harbor Perspectives in Medicine

Potential of Tetracycline Resistance Proteins To Evolve Tigecycline Resistance

(2015) Marius Linkevicius et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Molecular Characterization of Resistance to Extended-Spectrum Cephalosporins in Clinical Escherichia coli Isolates from Companion Animals in the United States

(2011) Bashar W. Shaheen et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Tn125-Related Acquisition ofblaNDM-Like Genes in Acinetobacter baumannii

(2011) Laurent Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Real-Time PCR and Statistical Analyses of acrAB and ramA Expression in Clinical Isolates of Klebsiella pneumoniae

(2008) A. Ruzin et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The CGView Server: a comparative genomics tool for circular genomes

(2008) J. R. Grant et al.   NUCLEIC ACIDS RESEARCH

Revised nomenclature for transposable genetic elements

(2008) Adam P. Roberts et al.   PLASMID