标题
Human transcription factor protein interaction networks
作者
关键词
-
出版物
Nature Communications
Volume 13, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2022-02-09
DOI
10.1038/s41467-022-28341-5
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Dual proteome-scale networks reveal cell-specific remodeling of the human interactome
- (2021) Edward L. Huttlin et al. CELL
- Loss-of-function mutation in IKZF2 leads to immunodeficiency with dysregulated germinal center reactions and reduction of MAIT cells
- (2021) Iivo Hetemäki et al. Science Immunology
- Combined proximity labeling and affinity purification−mass spectrometry workflow for mapping and visualizing protein interaction networks
- (2020) Xiaonan Liu et al. Nature Protocols
- The BioGRID database: A comprehensive biomedical resource of curated protein, genetic and chemical interactions
- (2020) Rose Oughtred et al. PROTEIN SCIENCE
- Gain-of-function CEBPE mutation causes non-canonical autoinflammatory inflammasomopathy
- (2019) Helka Göös et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- RSAT 2018: regulatory sequence analysis tools 20th anniversary
- (2018) Nga Thi Thuy Nguyen et al. NUCLEIC ACIDS RESEARCH
- Imaging dynamic and selective low-complexity domain interactions that control gene transcription
- (2018) Shasha Chong et al. SCIENCE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- YY1 Positively Regulates Transcription by Targeting Promoters and Super-Enhancers through the BAF Complex in Embryonic Stem Cells
- (2018) Jia Wang et al. Stem Cell Reports
- Transcription and mRNA export machineries SAGA and TREX-2 maintain monoubiquitinated H2B balance required for DNA repair
- (2018) Federica M. Evangelista et al. JOURNAL OF CELL BIOLOGY
- Proteomic analysis identifies transcriptional cofactors and homeobox transcription factors as TBX18 binding proteins
- (2018) Reginaldo Rivera-Reyes et al. PLoS One
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- Mapping the Ku Interactome Using Proximity-Dependent Biotin Identification in Human Cells
- (2018) Sanna Abbasi et al. JOURNAL OF PROTEOME RESEARCH
- CORUM: the comprehensive resource of mammalian protein complexes—2019
- (2018) Madalina Giurgiu et al. NUCLEIC ACIDS RESEARCH
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
- (2018) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- Nuclear Factor One X in Development and Disease
- (2018) Michael Piper et al. TRENDS IN CELL BIOLOGY
- Downstream promoter interactions of TFIID TAFs facilitate transcription reinitiation
- (2017) Yoo Jin Joo et al. GENES & DEVELOPMENT
- Nuclear factor one transcription factors as epigenetic regulators in cancer
- (2017) Mitchell Fane et al. INTERNATIONAL JOURNAL OF CANCER
- Damaging heterozygous mutations in NFKB1 lead to diverse immunologic phenotypes
- (2017) Meri Kaustio et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- SAGA Is a General Cofactor for RNA Polymerase II Transcription
- (2017) Tiago Baptista et al. MOLECULAR CELL
- KAT2A coupled with the α-KGDH complex acts as a histone H3 succinyltransferase
- (2017) Yugang Wang et al. NATURE
- ProHits-viz: a suite of web tools for visualizing interaction proteomics data
- (2017) James D R Knight et al. NATURE METHODS
- Transcription factor proteomics-Tools, applications, and challenges
- (2017) Jovan Simicevic et al. PROTEOMICS
- Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics
- (2017) Leena Yadav et al. Cell Systems
- Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters
- (2016) Wim J de Jonge et al. EMBO JOURNAL
- Meet the neighbors: Mapping local protein interactomes by proximity-dependent labeling with BioID
- (2016) Renata Varnaitė et al. PROTEOMICS
- Phenotypic and Interaction Profiling of the Human Phosphatases Identifies Diverse Mitotic Regulators
- (2016) Nicole St-Denis et al. Cell Reports
- Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure
- (2015) Shiran Naftelberg et al. Annual Review of Biochemistry
- The BioPlex Network: A Systematic Exploration of the Human Interactome
- (2015) Edward L. Huttlin et al. CELL
- Subunits of ADA-two-A-containing (ATAC) or Spt-Ada-Gcn5-acetyltrasferase (SAGA) Coactivator Complexes Enhance the Acetyltransferase Activity of GCN5
- (2015) Anne Riss et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes
- (2015) Jean-Philippe Lambert et al. Journal of Proteomics
- Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes
- (2015) X. Li et al. Molecular Systems Biology
- The Mediator complex: a central integrator of transcription
- (2015) Benjamin L. Allen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- A Quantitative Chaperone Interaction Network Reveals the Architecture of Cellular Protein Homeostasis Pathways
- (2014) Mikko Taipale et al. CELL
- The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription
- (2014) Jacques Bonnet et al. GENES & DEVELOPMENT
- Mutual antagonism between Sox10 and NFIA regulates diversification of glial lineages and glioma subtypes
- (2014) Stacey M Glasgow et al. NATURE NEUROSCIENCE
- CRE promoter sites modulate alternative splicing via p300-mediated histone acetylation
- (2014) Eva Dušková et al. RNA Biology
- Transcriptional Regulation and Its Misregulation in Disease
- (2013) Tong Ihn Lee et al. CELL
- DNA-Binding Specificities of Human Transcription Factors
- (2013) Arttu Jolma et al. CELL
- The Mediator complex and transcription regulation
- (2013) Zachary C. Poss et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS
- (2013) Markku Varjosalo et al. NATURE METHODS
- The CRAPome: a contaminant repository for affinity purification–mass spectrometry data
- (2013) Dattatreya Mellacheruvu et al. NATURE METHODS
- The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
- (2013) Sandra Orchard et al. NUCLEIC ACIDS RESEARCH
- The Protein Interaction Landscape of the Human CMGC Kinase Group
- (2013) Markku Varjosalo et al. Cell Reports
- The eukaryotic transcriptional machinery regulates mRNA translation and decay in the cytoplasm
- (2012) Nili Dahan et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- ATAC-king the complexity of SAGA during evolution
- (2012) G. Spedale et al. GENES & DEVELOPMENT
- A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells
- (2012) Kyle J. Roux et al. JOURNAL OF CELL BIOLOGY
- Genome-wide structure and organization of eukaryotic pre-initiation complexes
- (2012) Ho Sung Rhee et al. NATURE
- Sox9 and NFIA Coordinate a Transcriptional Regulatory Cascade during the Initiation of Gliogenesis
- (2012) Peng Kang et al. NEURON
- Analysis of the Human Endogenous Coregulator Complexome
- (2011) Anna Malovannaya et al. CELL
- Subunit Organization of the Human INO80 Chromatin Remodeling Complex
- (2011) Lu Chen et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PINA v2.0: mining interactome modules
- (2011) Mark J. Cowley et al. NUCLEIC ACIDS RESEARCH
- Interactions between subunits of the Mediator complex with gene-specific transcription factors
- (2011) Tilman Borggrefe et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- Roles of human INO80 chromatin remodeling enzyme in DNA replication and chromosome segregation suppress genome instability
- (2010) Shin-Kyoung Hur et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Proteomic Analysis of Native Hepatocyte Nuclear Factor-4α (HNF4α) Isoforms, Phosphorylation Status, and Interactive Cofactors
- (2010) Kenji Daigo et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Defining the budding yeast chromatin-associated interactome
- (2010) Jean-Philippe Lambert et al. Molecular Systems Biology
- SAINT: probabilistic scoring of affinity purification–mass spectrometry data
- (2010) Hyungwon Choi et al. NATURE METHODS
- p53 activates transcription by directing structural shifts in Mediator
- (2010) Krista D Meyer et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation
- (2009) Melissa J. Moore et al. CELL
- Defining the Human Deubiquitinating Enzyme Interaction Landscape
- (2009) Mathew E. Sowa et al. CELL
- Gcn5 and SAGA Regulate Shelterin Protein Turnover and Telomere Maintenance
- (2009) Boyko S. Atanassov et al. MOLECULAR CELL
- An integrated workflow for charting the human interaction proteome: insights into the PP2A system
- (2009) Timo Glatter et al. Molecular Systems Biology
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- A census of human transcription factors: function, expression and evolution
- (2009) Juan M. Vaquerizas et al. NATURE REVIEWS GENETICS
- TFCat: the curated catalog of mouse and human transcription factors
- (2009) Debra L Fulton et al. GENOME BIOLOGY
- The transcription factor Nfix is essential for normal brain development
- (2008) Christine E Campbell et al. BMC DEVELOPMENTAL BIOLOGY
- Nuclear Factor One Transcription Factors in CNS Development
- (2008) Sharon Mason et al. MOLECULAR NEUROBIOLOGY
- Coupling and coordination in gene expression processes: a systems biology view
- (2007) Suzanne Komili et al. NATURE REVIEWS GENETICS
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