Identification of an Elite Core Panel as a Key Breeding Resource to Accelerate the Rate of Genetic Improvement for Irrigated Rice

Identifying the superior traits for selecting the ideotype of rice cultivars

(2021) Reza Yadi et al.   CEREAL RESEARCH COMMUNICATIONS

A quantitative genomics map of rice provides genetic insights and guides breeding

(2021) Xin Wei et al.   NATURE GENETICS

Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations

(2020) Xiao Wang et al.   Journal of Animal Science and Biotechnology

Reinventing quantitative genetics for plant breeding: something old, something new, something borrowed, something BLUE

(2020) Rex Bernardo   HEREDITY

Genetic gain for rice yield in rainfed environments in India

(2020) Arvind Kumar et al.   FIELD CROPS RESEARCH

Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection

(2019) John Damien Platten et al.   PLoS One

Enhancing the rate of genetic gain in public-sector plant breeding programs: lessons from the breeder’s equation

(2019) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice

(2019) Juan David Arbelaez et al.   Rice

The rice genome revolution: from an ancient grain to Green Super Rice

(2018) Rod A. Wing et al.   NATURE REVIEWS GENETICS

Fast-Forwarding Genetic Gain

(2018) Huihui Li et al.   TRENDS IN PLANT SCIENCE

IR64: a high-quality and high-yielding mega variety

(2018) David J. Mackill et al.   Rice

Plant breeding selection tools built on factor analytic mixed models for multi-environment trial data

(2018) Alison B. Smith et al.   EUPHYTICA

Multi-objective optimized genomic breeding strategies for sustainable food improvement

(2018) Deniz Akdemir et al.   HEREDITY

Genomic variation in 3,010 diverse accessions of Asian cultivated rice

(2018) Wensheng Wang et al.   NATURE

Back to the future: revisiting MAS as a tool for modern plant breeding

(2018) Joshua N. Cobb et al.   THEORETICAL AND APPLIED GENETICS

Genotype Imputation in Winter Wheat Using First-Generation Haplotype Map SNPs Improves Genome-Wide Association Mapping and Genomic Prediction of Traits

(2018) Moses Nyine et al.   G3-Genes Genomes Genetics

Enhancing genetic gain in the era of molecular breeding

(2017) Yunbi Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Revisiting rice breeding methods – evaluating the use of rapid generation advance (RGA) for routine rice breeding

(2017) Bertrand C. Y. Collard et al.   PLANT PRODUCTION SCIENCE

Rapid breeding and varietal replacement are critical to adaptation of cropping systems in the developing world to climate change

(2017) Gary N. Atlin et al.   Global Food Security-Agriculture Policy Economics and Environment

RPAN: rice pan-genome browser for ∼3000 rice genomes

(2016) Chen Sun et al.   NUCLEIC ACIDS RESEARCH

Rice SNP-seek database update: new SNPs, indels, and queries

(2016) Locedie Mansueto et al.   NUCLEIC ACIDS RESEARCH

Coevolutionary Dynamics of Rice Blast Resistance GenePi-taandMagnaporthe oryzaeAvirulence GeneAVR-Pita 1

(2016) Yulin Jia et al.   PHYTOPATHOLOGY

Open access resources for genome-wide association mapping in rice

(2016) Susan R. McCouch et al.   Nature Communications

Efficient Breeding by Genomic Mating

(2016) Deniz Akdemir et al.   Frontiers in Genetics

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

(2016) Giovanny Covarrubias-Pazaran   PLoS One

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding

(2015) Cécile Grenier et al.   PLoS One

Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection

(2015) Weibo Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms

(2015) Daniel Money et al.   G3-Genes Genomes Genetics

The 3,000 rice genomes project: new opportunities and challenges for future rice research

(2014) Jia-Yang Li et al.   GigaScience

The challenge of feeding 9–10 billion people equitably and sustainably

(2013) H. C. J. Godfray   JOURNAL OF AGRICULTURAL SCIENCE

Sustainable Intensification in Agriculture: Premises and Policies

(2013) T. Garnett et al.   SCIENCE

Identity by Descent Between Distant Relatives: Detection and Applications

(2012) Sharon R. Browning et al.   Annual Review of Genetics

Genetic Characterization of a Core Set of a Tropical Maize Race Tuxpeño for Further Use in Maize Improvement

(2012) Weiwei Wen et al.   PLoS One

Model selection and its consequences for different split-plot designs with spatial covariance and trend

(2010) J. Spilke et al.   PLANT BREEDING

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

An animal breeding approach to the estimation of genetic and environmental trends from field populations1

(2009) D. J. Garrick   JOURNAL OF ANIMAL SCIENCE

Progress in ideotype breeding to increase rice yield potential

(2008) Shaobing Peng et al.   FIELD CROPS RESEARCH

Diversity analysis for resistance of rice (Oryza sativaL.) to blast disease [Magnaporthe grisea(Hebert) Barr.] using differential isolates from the Philippines

(2008) M. J. Telebanco-Yanoria et al.   PLANT BREEDING