Criteria for evaluating molecular markers: Comprehensive quality metrics to improve marker-assisted selection

Identification and pyramiding of QTLs for cold tolerance at the bud bursting and the seedling stages by use of single segment substitution lines in rice (Oryza sativa L.)

(2016) Tifeng Yang et al.   MOLECULAR BREEDING

Identification of a Pi9-Containing Rice Germplasm with a Newly Developed Robust Marker

(2016) Klaus Konrad Scheuermann et al.   PHYTOPATHOLOGY

Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars

(2016) Dagang Tian et al.   Rice

Molecular Screening of Blast Resistance Genes in Rice using SSR Markers

(2015) A.K. Singh et al.   Plant Pathology Journal

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)

(2015) Hasina Begum et al.   PLoS One

The 3,000 rice genomes project

(2014)   GigaScience

Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?

(2013) John Damien Platten et al.   BMC PLANT BIOLOGY

A QTL for high grain yield under lowland drought in the background of popular rice variety Sabitri from Nepal

(2013) Ram Baran Yadaw et al.   FIELD CROPS RESEARCH

A Review of Microsatellite Markers and Their Applications in Rice Breeding Programs to Improve Blast Disease Resistance

(2013) Gous Miah et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic, Physiological, and Gene Expression Analyses Reveal That Multiple QTL Enhance Yield of Rice Mega-Variety IR64 under Drought

(2013) Mallikarjuna Swamy B. P. et al.   PLoS One

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Identification and mapping of a QTL (qDTY1.1) with a consistent effect on grain yield under drought

(2012) Krishna Hari Ghimire et al.   FIELD CROPS RESEARCH

Genomewide markers as cofactors for precision mapping of quantitative trait loci

(2012) R. Bernardo   THEORETICAL AND APPLIED GENETICS

Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities

(2012) Shalabh Dixit et al.   THEORETICAL AND APPLIED GENETICS

Fine mapping of grain length QTLs on chromosomes 1 and 7 in Basmati rice (Oryza sativa L.)

(2011) Rakesh Singh et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

Dynamic quantitative trait loci for salt stress components on chromosome 1 of rice

(2010) Tanveer Ul Haq et al.   FUNCTIONAL PLANT BIOLOGY

New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield

(2010) Taiichiro Ookawa et al.   Nature Communications

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

(2009) K. L. McNally et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Marker-assisted selection: an approach for precision plant breeding in the twenty-first century

(2007) B. C.Y Collard et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES