Effects of viremia and CD4 recovery on gut “microbiome-immunity” axis in treatment-naïve HIV-1-infected patients undergoing antiretroviral therapy

Altered gut microbiota correlate with different immune responses to HAART in HIV-infected individuals

(2021) Yirui Xie et al.   BMC MICROBIOLOGY

Impact of long-term antiretroviral therapy on gut and oral microbiotas in HIV-1-infected patients

(2021) Mayumi Imahashi et al.   Scientific Reports

Diving into inflammation: a pilot study exploring the dynamics of the immune-microbiota axis in ileal tissue layers of patients with Crohn’s disease

(2021) Edda Russo et al.   Journal of Crohns & Colitis

Free Fatty Acids Signature in Human Intestinal Disorders: Significant Association between Butyric Acid and Celiac Disease

(2021) Simone Baldi et al.   Nutrients

Long-Term Suppressive cART Is Not Sufficient to Restore Intestinal Permeability and Gut Microbiota Compositional Changes

(2021) Giuseppe Ancona et al.   Frontiers in Immunology

Dysbiotic Fecal Microbiome in HIV-1 Infected Individuals in Ghana

(2021) Prince Kofi Parbie et al.   Frontiers in Cellular and Infection Microbiology

African green monkeys avoid SIV disease progression by preventing intestinal dysfunction and maintaining mucosal barrier integrity

(2020) Kevin D. Raehtz et al.   PLoS Pathogens

Increased IL-8 levels in HIV-infected individuals who initiated ART with CD4+ T cell counts

(2020) Joel Henrique Ellwanger et al.   MICROBES AND INFECTION

Comparison of Overall and Comorbidity-Free Life Expectancy Between Insured Adults With and Without HIV Infection, 2000-2016

(2020) Julia L. Marcus et al.   JAMA Network Open

Contribution of the Microbiota to Intestinal Homeostasis and its Role in the Pathogenesis of HIV-1 Infection

(2019) Jorge A. Luján T et al.   CURRENT HIV RESEARCH

Evolution of the gut microbiome following acute HIV-1 infection

(2019) Muntsa Rocafort et al.   Microbiome

Influence of a 3-month low-calorie Mediterranean diet compared to the vegetarian diet on human gut microbiota and SCFA: the CARDIVEG Study

(2019) Giuditta Pagliai et al.   EUROPEAN JOURNAL OF NUTRITION

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Composition of gut microbiota of children and adolescents with perinatal HIV infection taking antiretroviral therapy in Zimbabwe

(2019) Trym T Flygel et al.   JOURNAL OF INFECTIOUS DISEASES

Evaluation and comparison of short chain fatty acids composition in gut diseases

(2019) Elena Niccolai et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota

(2018) Simon Deusch et al.   AIDS

Altered gut microbiome composition in HIV infection

(2018) Alessandra Bandera et al.   Current Opinion in HIV and AIDS

HIV and aging

(2018) Seema N. Desai et al.   Current Opinion in HIV and AIDS

Impact of antiretroviral drugs on the microbiome

(2018) Sandra Pinto-Cardoso et al.   Current Opinion in HIV and AIDS

Association Between Gut Microbiota and CD4 Recovery in HIV-1 Infected Patients

(2018) Wei Lu et al.   Frontiers in Microbiology

Changes in intestinal microbiota in HIV-1-infected subjects following cART initiation: influence of CD4+ T cell count

(2018) Yongjia Ji et al.   Emerging Microbes & Infections

Enrichment of gut-derived Fusobacterium is associated with suboptimal immune recovery in HIV-infected individuals

(2018) Soo Ching Lee et al.   Scientific Reports

HIV-associated anaerobes ferment TB risk

(2017) Jennifer A. Philips   Science Translational Medicine

Differential effects of antiretrovirals on microbial translocation and gut microbiota composition of HIV-infected patients

(2017) María J. Villanueva-Millán et al.   Journal of the International AIDS Society

Imbalance in the game of T cells: What can the CD4/CD8 T-cell ratio tell us about HIV and health?

(2017) Joseph A. McBride et al.   PLoS Pathogens

Fecal Bacterial Communities in treated HIV infected individuals on two antiretroviral regimens

(2017) Sandra Pinto-Cardoso et al.   Scientific Reports

The gut microbiome in human immunodeficiency virus infection

(2016) Gili Zilberman-Schapira et al.   BMC Medicine

Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome

(2016) Cynthia L. Monaco et al.   Cell Host & Microbe

Complexities of Gut Microbiome Dysbiosis in the Context of HIV Infection and Antiretroviral Therapy

(2016) SX Li et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Gut Mucosal Barrier Dysfunction, Microbial Dysbiosis, and Their Role in HIV-1 Disease Progression

(2016) Joseph C. Mudd et al.   JOURNAL OF INFECTIOUS DISEASES

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease

(2016) Kelly A. Shaw et al.   Genome Medicine

Gut barrier structure, mucosal immunity and intestinal microbiota in the pathogenesis and treatment of HIV infection

(2016) Camilla Tincati et al.   AIDS Research and Therapy

Gut Microbiota Linked to Sexual Preference and HIV Infection

(2016) Marc Noguera-Julian et al.   EBioMedicine

START or SMART? Timing of Antiretroviral Therapy Initiation and Cardiovascular Risk for People With Human Immunodeficiency Virus Infection

(2016) Mark J. Siedner   Open Forum Infectious Diseases

Gut microbiota diversity predicts immune status in HIV-1 infection

(2015) Piotr Nowak et al.   AIDS

Estimating diversity via frequency ratios

(2015) Amy Willis et al.   BIOMETRICS

Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function

(2015) Caleb J. Kelly et al.   Cell Host & Microbe

Dysbiotic bacteria translocate in progressive SIV infection

(2015) Z Klase et al.   Mucosal Immunology

Comparative impact of antiretroviral drugs on markers of inflammation and immune activation during the first two years of effective therapy for HIV-1 infection: an observational study

(2014) Suhaib Hattab et al.   BMC INFECTIOUS DISEASES

Intestinal Microbiota, Microbial Translocation, and Systemic Inflammation in Chronic HIV Infection

(2014) Duy M. Dinh et al.   JOURNAL OF INFECTIOUS DISEASES

High IP-10 levels decrease T cell function in HIV-1-infected individuals on ART

(2014) L. A. Ramirez et al.   JOURNAL OF LEUKOCYTE BIOLOGY

An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia

(2014) S M Dillon et al.   Mucosal Immunology

Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals

(2014) J F Vázquez-Castellanos et al.   Mucosal Immunology

Increased Risk of Serious Non-AIDS-Related Events in HIV-Infected Subjects on Antiretroviral Therapy Associated with a Low CD4/CD8 Ratio

(2014) Sergio Serrano-Villar et al.   PLoS One

HIV-Infected Individuals with Low CD4/CD8 Ratio despite Effective Antiretroviral Therapy Exhibit Altered T Cell Subsets, Heightened CD8+ T Cell Activation, and Increased Risk of Non-AIDS Morbidity and Mortality

(2014) Sergio Serrano-Villar et al.   PLoS Pathogens

A Compositional Look at the Human Gastrointestinal Microbiome and Immune Activation Parameters in HIV Infected Subjects

(2014) Ece A. Mutlu et al.   PLoS Pathogens

Host lifestyle affects human microbiota on daily timescales

(2014) Lawrence A David et al.   GENOME BIOLOGY

Gut Microbiota-Derived Short-Chain Fatty Acids, T Cells, and Inflammation

(2014) Chang H. Kim et al.   Immune Network

Alterations in the Gut Microbiota Associated with HIV-1 Infection

(2013) Catherine A. Lozupone et al.   Cell Host & Microbe

Microbial Translocation in the Pathogenesis of HIV Infection and AIDS

(2013) Giulia Marchetti et al.   CLINICAL MICROBIOLOGY REVIEWS

Systemic Effects of Inflammation on Health during Chronic HIV Infection

(2013) Steven G. Deeks et al.   IMMUNITY

Immune activation and HIV persistence: implications for curative approaches to HIV infection

(2013) Nichole R. Klatt et al.   IMMUNOLOGICAL REVIEWS

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

(2013) Nicholas Arpaia et al.   NATURE

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Dysbiosis of the Gut Microbiota Is Associated with HIV Disease Progression and Tryptophan Catabolism

(2013) Ivan Vujkovic-Cvijin et al.   Science Translational Medicine

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota

(2013) Ian H McHardy et al.   Microbiome

The Effect of a Year of Highly Active Antiretroviral Therapy on Immune Reconstruction and Cytokines in HIV/AIDS Patients

(2012) Yunhai Yao et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Microbial Translocation Across the GI Tract

(2012) Jason M. Brenchley et al.   Annual Review of Immunology

HIV-1 Infection of Human Intestinal Lamina Propria CD4+ T Cells In Vitro Is Enhanced by Exposure to Commensal Escherichia coli

(2012) S. M. Dillon et al.   JOURNAL OF IMMUNOLOGY

Microbial translocation, immune activation, and HIV disease

(2012) Nichole R. Klatt et al.   TRENDS IN MICROBIOLOGY

Plasma IP-10 Is Associated with Rapid Disease Progression in Early HIV-1 Infection

(2012) Yanmei Jiao et al.   VIRAL IMMUNOLOGY

HIV and Inflammation: Mechanisms and Consequences

(2012) Peter W. Hunt   Current HIV/AIDS Reports

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Acute HIV Infection Induces Mucosal Infiltration With CD4+ and CD8+ T Cells, Epithelial Apoptosis, and a Mucosal Barrier Defect

(2010) Hans–Jörg Epple et al.   GASTROENTEROLOGY

Biomarkers of immune dysfunction in HIV

(2010) Daniel E Nixon et al.   Current Opinion in HIV and AIDS

Drug-induced lipotoxicity: Lipodystrophy associated with HIV-1 infection and antiretroviral treatment

(2009) Francesc Villarroya et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS