Rapid evolutionary turnover of mobile genetic elements drives bacterial resistance to phages
出版年份 2021 全文链接
标题
Rapid evolutionary turnover of mobile genetic elements drives bacterial resistance to phages
作者
关键词
-
出版物
SCIENCE
Volume 374, Issue 6566, Pages 488-492
出版商
American Association for the Advancement of Science (AAAS)
发表日期
2021-10-22
DOI
10.1126/science.abb1083
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Interactions between bacterial and phage communities in natural environments
- (2021) Anne Chevallereau et al. NATURE REVIEWS MICROBIOLOGY
- Temporal shifts in antibiotic resistance elements govern phage-pathogen conflicts
- (2021) Kristen N. LeGault et al. SCIENCE
- Molecular basis of CD-NTase nucleotide selection in CBASS anti-phage defense
- (2021) Apurva A. Govande et al. Cell Reports
- The arms race between bacteria and their phage foes
- (2020) Hannah G. Hampton et al. NATURE
- Abortive Infection: Bacterial Suicide as an Antiviral Immune Strategy
- (2020) Anna Lopatina et al. Annual Review of Virology
- Evolutionary Ecology and Interplay of Prokaryotic Innate and Adaptive Immune Systems
- (2020) Tatiana Dimitriu et al. CURRENT BIOLOGY
- Diverse enzymatic activities mediate antiviral immunity in prokaryotes
- (2020) Linyi Gao et al. SCIENCE
- Bacterial Retrons Function In Anti-Phage Defense
- (2020) Adi Millman et al. CELL
- Phage Therapy: A Renewed Approach to Combat Antibiotic-Resistant Bacteria
- (2019) Kaitlyn E. Kortright et al. Cell Host & Microbe
- CRISPR-Cas systems are present predominantly on mobile genetic elements in Vibrio species
- (2019) Nathan D. McDonald et al. BMC GENOMICS
- Assembly of long, error-prone reads using repeat graphs
- (2019) Mikhail Kolmogorov et al. NATURE BIOTECHNOLOGY
- A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
- (2019) Philip Arevalo et al. CELL
- Phage resistance evolution in vitro is not reflective of in vivo outcome in a plant‐bacteria‐phage system
- (2019) Catherine A. Hernandez et al. EVOLUTION
- Resistance in marine cyanobacteria differs against specialist and generalist cyanophages
- (2019) Sophia Zborowsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial biodiversity drives the evolution of CRISPR-based phage resistance
- (2019) Ellinor O. Alseth et al. NATURE
- Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire
- (2019) Eugene V. Koonin et al. NATURE REVIEWS GENETICS
- The pan-immune system of bacteria: antiviral defence as a community resource
- (2019) Aude Bernheim et al. NATURE REVIEWS MICROBIOLOGY
- A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
- (2018) Lukas Zimmermann et al. JOURNAL OF MOLECULAR BIOLOGY
- Systematic discovery of antiphage defense systems in the microbial pangenome
- (2018) Shany Doron et al. SCIENCE
- High resolution time series reveals cohesive but short-lived communities in coastal plankton
- (2018) Antonio M. Martin-Platero et al. Nature Communications
- Anti-phage islands force their target phage to directly mediate island excision and spread
- (2018) Amelia C. McKitterick et al. Nature Communications
- Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses
- (2018) Kathryn M. Kauffman et al. Scientific Data
- A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
- (2018) Kathryn M. Kauffman et al. NATURE
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
- (2017) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
- (2017) Martin Steinegger et al. NATURE BIOTECHNOLOGY
- Long-term genomic coevolution of host-parasite interaction in the natural environment
- (2017) Elina Laanto et al. Nature Communications
- Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- (2017) Ryan R. Wick et al. PLoS Computational Biology
- How clonal are bacteria over time?
- (2016) B Jesse Shapiro CURRENT OPINION IN MICROBIOLOGY
- Evolutionary Ecology of Prokaryotic Immune Mechanisms
- (2016) Stineke van Houte et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.
- (2015) Ryan R. Wick et al. BIOINFORMATICS
- Parasite Exposure Drives Selective Evolution of Constitutive versus Inducible Defense
- (2015) Edze R. Westra et al. CURRENT BIOLOGY
- Geographical and longitudinal analysis of Listeria monocytogenes genetic diversity reveals its correlation with virulence and unique evolution
- (2015) Yuelan Yin et al. MICROBIOLOGICAL RESEARCH
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
- (2015) Michael Baym et al. PLoS One
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Populations, not clones, are the unit of vibrio pathogenesis in naturally infected oysters
- (2014) Astrid Lemire et al. ISME Journal
- Explaining microbial genomic diversity in light of evolutionary ecology
- (2014) Otto X. Cordero et al. NATURE REVIEWS MICROBIOLOGY
- REBASE—a database for DNA restriction and modification: enzymes, genes and genomes
- (2014) Richard J. Roberts et al. NUCLEIC ACIDS RESEARCH
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The methylomes of six bacteria
- (2012) Iain A. Murray et al. NUCLEIC ACIDS RESEARCH
- Repeatability and Contingency in the Evolution of a Key Innovation in Phage Lambda
- (2012) J. R. Meyer et al. SCIENCE
- Population Genomics of Early Events in the Ecological Differentiation of Bacteria
- (2012) B. J. Shapiro et al. SCIENCE
- Genome Engineering in Vibrio cholerae: A Feasible Approach to Address Biological Issues
- (2012) Marie-Eve Val et al. PLoS Genetics
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
- (2011) Nabil-Fareed Alikhan et al. BMC GENOMICS
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
- (2011) K. S. Makarova et al. JOURNAL OF BACTERIOLOGY
- Genomic island variability facilitates Prochlorococcus–virus coexistence
- (2011) Sarit Avrani et al. NATURE
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Clinical Clostridium difficile: Clonality and Pathogenicity Locus Diversity
- (2011) Kate E. Dingle et al. PLoS One
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Mugsy: fast multiple alignment of closely related whole genomes
- (2010) Samuel V. Angiuoli et al. BIOINFORMATICS
- genoPlotR: comparative gene and genome visualization in R
- (2010) L. Guy et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- O-antigen diversity and lateral transfer of the wbe region among Vibrio splendidus isolates
- (2010) Hans Wildschutte et al. ENVIRONMENTAL MICROBIOLOGY
- Silent Mischief: Bacteriophage Mu Insertions Contaminate Products of Escherichia coli Random Mutagenesis Performed Using Suicidal Transposon Delivery Plasmids Mobilized by Broad-Host-Range RP4 Conjugative Machinery
- (2010) L. Ferrieres et al. JOURNAL OF BACTERIOLOGY
- The phage-related chromosomal islands of Gram-positive bacteria
- (2010) Richard P. Novick et al. NATURE REVIEWS MICROBIOLOGY
- Bacteriophage resistance mechanisms
- (2010) Simon J. Labrie et al. NATURE REVIEWS MICROBIOLOGY
- A simple and efficient method for concentration of ocean viruses by chemical flocculation
- (2010) Seth G. John et al. Environmental Microbiology Reports
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities
- (2008) A. F. Andersson et al. SCIENCE
- Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
- (2008) D. E. Hunt et al. SCIENCE
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