Real time structural search of the Protein Data Bank

BioJava 5: A community driven open-source bioinformatics library

(2019) Aleix Lafita et al.   PLoS Computational Biology

Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

(2019) Spencer E. Bliven et al.   PLoS Computational Biology

Protein Data Bank: the single global archive for 3D macromolecular structure data

(2018) et al.   NUCLEIC ACIDS RESEARCH

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

(2018) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen

(2017) Lorenzo Di Rienzo et al.   Scientific Reports

Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology

(2017) Martino Bertoni et al.   Scientific Reports

CATH: an expanded resource to predict protein function through structure and sequence

(2016) Natalie L. Dawson et al.   NUCLEIC ACIDS RESEARCH

Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB

(2015) Hirofumi Suzuki et al.   BIOINFORMATICS

Structure-Based Characterization of Multiprotein Complexes

(2014) Markus Wiederstein et al.   STRUCTURE

ECOD: An Evolutionary Classification of Protein Domains

(2014) Hua Cheng et al.   PLoS Computational Biology

MMDB and VAST+: tracking structural similarities between macromolecular complexes

(2013) Thomas Madej et al.   NUCLEIC ACIDS RESEARCH

Conventions and workflows for usingSitus

(2012) Willy Wriggers   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Detection of Spatial Correlations in Protein Structures and Molecular Complexes

(2012) Manfred J. Sippl et al.   STRUCTURE

ProDy: Protein Dynamics Inferred from Theory and Experiments

(2011) A. Bakan et al.   BIOINFORMATICS

Molecular Surface Representation Using 3D Zernike Descriptors for Protein Shape Comparison and Docking

(2011) Daisuke Kihara et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Representing and comparing protein folds and fold families using three-dimensional shape-density representations

(2011) Lazaros Mavridis et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

3D-SURFER: software for high-throughput protein surface comparison and analysis

(2009) David La et al.   BIOINFORMATICS

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

MM-align: a quick algorithm for aligning multiple-chain protein complex structures using iterative dynamic programming

(2009) Srayanta Mukherjee et al.   NUCLEIC ACIDS RESEARCH

Searching protein structure databases with DaliLite v.3

(2008) L. Holm et al.   BIOINFORMATICS

Multiple Subunit Fitting into a Low-Resolution Density Map of a Macromolecular Complex Using a Gaussian Mixture Model

(2008) Takeshi Kawabata   BIOPHYSICAL JOURNAL