Transcriptome and metabolome analyses revealed the response mechanism of apple to different phosphorus stresses

Metabolomic markers and physiological adaptations for high phosphate utilization efficiency in rice

(2020) Mutsumi Watanabe et al.   PLANT CELL AND ENVIRONMENT

GmPAP12 Is Required for Nodule Development and Nitrogen Fixation Under Phosphorus Starvation in Soybean

(2020) Yue Wang et al.   Frontiers in Plant Science

Characterization and selection for phosphorus deficiency tolerance in 99 spring wheat genotypes in Montana

(2019) Kenedy Etone Epie et al.   JOURNAL OF PLANT NUTRITION

Transcriptome analysis in roots and leaves of wheat seedlings in response to low-phosphorus stress

(2019) Jun Wang et al.   Scientific Reports

OUP accepted manuscript

(2018)   BIOINFORMATICS

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.)

(2018) Panrong Ren et al.   Frontiers in Plant Science

Combining metabolite profiling with genome-wide association study to reveal response mechanisms of Zea mays seedlings under low-phosphorus conditions

(2018) Bowen Luo et al.   PLANT JOURNAL

Temporal development of the barley leaf metabolic response to Pi limitation

(2017) Ralitza Alexova et al.   PLANT CELL AND ENVIRONMENT

The molecular basis of phosphite and hypophosphite recognition by ABC-transporters

(2017) Claudine Bisson et al.   Nature Communications

Abiotic Stress Responses and Microbe-Mediated Mitigation in Plants: The Omics Strategies

(2017) Kamlesh K. Meena et al.   Frontiers in Plant Science

Strand-specific RNA-Seq transcriptome analysis of genotypes with and without low-phosphorus tolerance provides novel insights into phosphorus-use efficiency in maize

(2016) Qingguo Du et al.   BMC PLANT BIOLOGY

Comparative transcriptome analysis highlights the crucial roles of photosynthetic system in drought stress adaptation in upland rice

(2016) Zheng-Feng Zhang et al.   Scientific Reports

Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses

(2015) Etienne A. Thévenot et al.   JOURNAL OF PROTEOME RESEARCH

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome-wide identification of phosphate-deficiency-responsive genes in soybean roots by high-throughput sequencing

(2015) Houqing Zeng et al.   PLANT AND SOIL

Metabolomic profiling from leaves and roots of tomato ( Solanum lycopersicum L.) plants grown under nitrogen, phosphorus or potassium-deficient condition

(2015) Jwakyung Sung et al.   PLANT SCIENCE

Natural variations in expression of regulatory and detoxification related genes under limiting phosphate and arsenate stress in Arabidopsis thaliana

(2015) Tapsi Shukla et al.   Frontiers in Plant Science

Phosphate Nutrition: Improving Low-Phosphate Tolerance in Crops

(2014) Damar Lizbeth López-Arredondo et al.   Annual Review of Plant Biology

He-Ne laser treatment improves the photosynthetic efficiency of wheat exposed to enhanced UV-B radiation

(2014) Huize Chen et al.   LASER PHYSICS

Changes in flavonol content and transcript levels of genes in the flavonoid pathway in tobacco under phosphorus deficiency

(2014) Hongfang Jia et al.   PLANT GROWTH REGULATION

Selection of low-variance expressed Malus x domestica (apple) genes for use as quantitative PCR reference genes (housekeepers)

(2014) Judith Bowen et al.   Tree Genetics & Genomes

Antifungal Activity against Plant Pathogens of Metabolites from the Endophytic Fungus Cladosporium cladosporioides

(2013) Xiaoning Wang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Root developmental adaptation to phosphate starvation: better safe than sorry

(2011) Benjamin Péret et al.   TRENDS IN PLANT SCIENCE

Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorus deficiency

(2010) Stephen L. Byrne et al.   ANNALS OF BOTANY

Transcriptomic analysis of rice responses to low phosphorus stress

(2010) LiHua Li et al.   CHINESE SCIENCE BULLETIN

GC-MS Analysis of Headspace and Liquid Extracts for Metabolomic Differentiation of Citrus Huanglongbing and Zinc Deficiency in Leaves of ‘Valencia’ Sweet Orange from Commercial Groves

(2010) Juan Manuel Cevallos-Cevallos et al.   PHYTOCHEMICAL ANALYSIS

Photosynthetic responses of cottonwood seedlings grown in glacial through future atmospheric [CO2] vary with phosphorus supply

(2010) D. T. Tissue et al.   TREE PHYSIOLOGY

Stress Response Versus Stress Tolerance: A Transcriptome Analysis of Two Rice Lines Contrasting in Tolerance to Phosphorus Deficiency

(2009) Juan Pariasca-Tanaka et al.   Rice

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

An evaluation of non-destructive methods to estimate total chlorophyll content

(2008) D. Cassol et al.   PHOTOSYNTHETICA

Comparative proteome analyses of phosphorus responses in maize (Zea maysL.) roots of wild-type and a low-P-tolerant mutant reveal root characteristics associated with phosphorus efficiency

(2008) Kunpeng Li et al.   PLANT JOURNAL