Selection of low-variance expressed Malus x domestica (apple) genes for use as quantitative PCR reference genes (housekeepers)

Selection and validation of suitable reference genes for mRNA qRT-PCR analysis using somatic embryogenic cultures, floral and vegetative tissues in citrus

(2013) Zheng Liu et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Genome-wide analysis and identification of stress-responsive genes of the NAM–ATAF1,2–CUC2 transcription factor family in apple

(2013) Hongyan Su et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Identification and Validation of Reference Genes for Transcript Normalization in Strawberry (Fragaria × ananassa) Defense Responses

(2013) Francisco Amil-Ruiz et al.   PLoS One

Down-regulation of POLYGALACTURONASE1 alters firmness, tensile strength and water loss in apple (Malus x domestica) fruit

(2012) Ross G Atkinson et al.   BMC PLANT BIOLOGY

A genomics approach to understanding the role of auxin in apple (Malus x domestica) fruit size control

(2012) Fanny Devoghalaere et al.   BMC PLANT BIOLOGY

Evaluation of Reference Genes for the Relative Quantification of Apple stem grooving virus and Apple mosaic virus in Apple Trees

(2012) S. Gadiou et al.   Indian Journal of Virology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Selection and validation of suitable reference genes for miRNA expression normalization by quantitative RT-PCR in citrus somatic embryogenic and adult tissues

(2012) Shu-Jun Kou et al.   PLANT CELL REPORTS

Reference Genes for Accurate Transcript Normalization in Citrus Genotypes under Different Experimental Conditions

(2012) Valéria Mafra et al.   PLoS One

Mining the apple genome reveals a family of nine ethylene receptor genes

(2012) Hilary S. Ireland et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

SEPALLATA1/2-suppressed mature apples have low ethylene, high auxin and reduced transcription of ripening-related genes

(2012) Robert J. Schaffer et al.   AoB Plants

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

(2011) Lei Chen et al.   PLANTA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

The Role of Ethylene and Cold Temperature in the Regulation of the Apple POLYGALACTURONASE1 Gene and Fruit Softening

(2010) E. Tacken et al.   PLANT PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Gene expression studies in kiwifruit and gene over-expression in Arabidopsis indicates that GDP-L-galactose guanyltransferase is a major control point of vitamin C biosynthesis

(2009) Sean M. Bulley et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of LEAFY in apple leads to a columnar phenotype with shorter internodes

(2009) Henryk Flachowsky et al.   PLANTA

Comparative Analysis and Functional Annotation of a Large Expressed Sequence Tag Collection of Apple

(2009) Ksenija Gasic et al.   Plant Genome

Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

(2008) Bart J Janssen et al.   BMC PLANT BIOLOGY

NAA and Ethylene Regulate Expression of Genes Related to Ethylene Biosynthesis, Perception, and Cell Wall Degradation During Fruit Abscission and Ripening in ‘Delicious’ Apples

(2008) Jianguo Li et al.   JOURNAL OF PLANT GROWTH REGULATION