CellExplorer: A framework for visualizing and characterizing single neurons

An update to Hippocampome.org by integrating single-cell phenotypes with circuit function in vivo

(2021) Alberto Sanchez-Aguilera et al.   PLOS BIOLOGY

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

(2020) Quanxin Wang et al.   CELL

Cooling of Medial Septum Reveals Theta Phase Lag Coordination of Hippocampal Cell Assemblies

(2020) Peter Christian Petersen et al.   NEURON

Layer-Specific Physiological Features and Interlaminar Interactions in the Primary Visual Cortex of the Mouse

(2019) Yuta Senzai et al.   NEURON

High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification

(2019) Xiaoxuan Jia et al.   JOURNAL OF NEUROPHYSIOLOGY

Spontaneous behaviors drive multidimensional, brainwide activity

(2019) Carsen Stringer et al.   SCIENCE

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

(2019) Nathan W. Gouwens et al.   NATURE NEUROSCIENCE

Distributed coding of choice, action and engagement across the mouse brain

(2019) Nicholas A. Steinmetz et al.   NATURE

Enhanced and unified anatomical labeling for a common mouse brain atlas

(2019) Uree Chon et al.   Nature Communications

Integrated open-source software for multiscale electrophysiology

(2019) Konstantinos Nasiotis et al.   Scientific Data

A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo

(2018) Pierre Yger et al.   eLife

A Fully Automated Approach to Spike Sorting

(2017) Jason E. Chung et al.   NEURON

Physiological Properties and Behavioral Correlates of Hippocampal Granule Cells and Mossy Cells

(2017) Yuta Senzai et al.   NEURON

Pyramidal Cell-Interneuron Circuit Architecture and Dynamics in Hippocampal Networks

(2017) Daniel Fine English et al.   NEURON

Validating silicon polytrodes with paired juxtacellular recordings: method and dataset

(2016) Joana P. Neto et al.   JOURNAL OF NEUROPHYSIOLOGY

High-Performance Computing in Neuroscience for Data-Driven Discovery, Integration, and Dissemination

(2016) Kristofer E. Bouchard et al.   NEURON

Diversity in neural firing dynamics supports both rigid and learned hippocampal sequences

(2016) A. D. Grosmark et al.   SCIENCE

Lognormal firing rate distribution reveals prominent fluctuation–driven regime in spinal motor networks

(2016) Peter C Petersen et al.   eLife

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons

(2016) Mark S Cembrowski et al.   eLife

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Diverse coupling of neurons to populations in sensory cortex

(2015) Michael Okun et al.   NATURE

Internally organized mechanisms of the head direction sense

(2015) Adrien Peyrache et al.   NATURE NEUROSCIENCE

Tools for Probing Local Circuits: High-Density Silicon Probes Combined with Optogenetics

(2015) György Buzsáki et al.   NEURON

Cortical Membrane Potential Signature of Optimal States for Sensory Signal Detection

(2015) Matthew J. McGinley et al.   NEURON

Neurodata Without Borders: Creating a Common Data Format for Neurophysiology

(2015) Jeffery L. Teeters et al.   NEURON

Tasks for inhibitory interneurons in intact brain circuits

(2015) Lisa Roux et al.   NEUROPHARMACOLOGY

Labeling of active neural circuits in vivo with designed calcium integrators

(2015) B. F. Fosque et al.   SCIENCE

Selective information routing by ventral hippocampal CA1 projection neurons

(2015) S. Ciocchi et al.   SCIENCE

Hippocampome.org: a knowledge base of neuron types in the rodent hippocampus

(2015) Diek W Wheeler et al.   eLife

Interneuron cell types are fit to function

(2014) Adam Kepecs et al.   NATURE

Putting big data to good use in neuroscience

(2014) Terrence J Sejnowski et al.   NATURE NEUROSCIENCE

The log-dynamic brain: how skewed distributions affect network operations

(2014) György Buzsáki et al.   NATURE REVIEWS NEUROSCIENCE

Inhibition-Induced Theta Resonance in Cortical Circuits

(2013) Eran Stark et al.   NEURON

Optogenetic Dissection of Entorhinal-Hippocampal Functional Connectivity

(2013) S.-J. Zhang et al.   SCIENCE

Diode probes for spatiotemporal optical control of multiple neurons in freely moving animals

(2012) Eran Stark et al.   JOURNAL OF NEUROPHYSIOLOGY

Control of timing, rate and bursts of hippocampal place cells by dendritic and somatic inhibition

(2012) Sébastien Royer et al.   NATURE NEUROSCIENCE

Hippocampal CA1 pyramidal cells form functionally distinct sublayers

(2011) Kenji Mizuseki et al.   NATURE NEUROSCIENCE

Brainstorm: A User-Friendly Application for MEG/EEG Analysis

(2011) François Tadel et al.   Computational Intelligence and Neuroscience

Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons

(2010) Bernardo Rudy et al.   Developmental Neurobiology

FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data

(2010) Robert Oostenveld et al.   Computational Intelligence and Neuroscience

Principles of neural ensemble physiology underlying the operation of brain–machine interfaces

(2009) Miguel A. L. Nicolelis et al.   NATURE REVIEWS NEUROSCIENCE

Theta Oscillations Provide Temporal Windows for Local Circuit Computation in the Entorhinal-Hippocampal Loop

(2009) Kenji Mizuseki et al.   NEURON

PINP: A New Method of Tagging Neuronal Populations for Identification during In Vivo Electrophysiological Recording

(2009) Susana Q. Lima et al.   PLoS One

Behavior-dependent short-term assembly dynamics in the medial prefrontal cortex

(2008) Shigeyoshi Fujisawa et al.   NATURE NEUROSCIENCE

Entrainment of Neocortical Neurons and Gamma Oscillations by the Hippocampal Theta Rhythm

(2008) Anton Sirota et al.   NEURON

Neuronal Diversity and Temporal Dynamics: The Unity of Hippocampal Circuit Operations

(2008) T. Klausberger et al.   SCIENCE