Fecal Microbiota and Metabolome in a Mouse Model of Spontaneous Chronic Colitis

Investigation of faecal volatile organic metabolites as novel diagnostic biomarkers in inflammatory bowel disease

(2016) I. Ahmed et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Dysbiosis of the fecal microbiota in the TNBS-induced Crohn’s disease mouse model

(2016) Qing He et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Rectal prolapse in Winnie mice with spontaneous chronic colitis: changes in intrinsic and extrinsic innervation of the rectum

(2016) Ahmed A. Rahman et al.   CELL AND TISSUE RESEARCH

Comparative analysis of the in vitro cytotoxicity of the dietary biogenic amines tyramine and histamine

(2016) Daniel M. Linares et al.   FOOD CHEMISTRY

Ribose Accelerates Gut Motility and Suppresses Mouse Body Weight Gaining

(2016) Yan Liu et al.   International Journal of Biological Sciences

Urinary metabolites as noninvasive biomarkers of gastrointestinal diseases: A clinical review

(2016) Irene Sarosiek et al.   World Journal of Gastrointestinal Oncology

An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection

(2016) Vijay C. Antharam et al.   PLoS One

Alterations in the distal colon innervation in Winnie mouse model of spontaneous chronic colitis

(2015) Ahmed A. Rahman et al.   CELL AND TISSUE RESEARCH

Alteration of gut microbiota by vancomycin and bacitracin improves insulin resistance via glucagon-like peptide 1 in diet-induced obesity

(2015) Injae Hwang et al.   FASEB JOURNAL

Supplementation of Saturated Long-Chain Fatty Acids Maintains Intestinal Eubiosis and Reduces Ethanol-induced Liver Injury in Mice

(2015) Peng Chen et al.   GASTROENTEROLOGY

Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence

(2015) Monika Schaubeck et al.   GUT

Analysis of Exhaled Breath Volatile Organic Compounds in Inflammatory Bowel Disease: A Pilot Study

(2015) Lucy C. Hicks et al.   Journal of Crohns & Colitis

Enterohepatic Helicobacter Species as a Potential Causative Factor in Inflammatory Bowel Disease

(2015) Qiao Yu et al.   MEDICINE

Role of the normal gut microbiota

(2015) Sai Manasa Jandhyala   WORLD JOURNAL OF GASTROENTEROLOGY

The Role of Microbial Amino Acid Metabolism in Host Metabolism

(2015) Evelien Neis et al.   Nutrients

Microbial Population Differentials between Mucosal and Submucosal Intestinal Tissues in Advanced Crohn's Disease of the Ileum

(2015) Rodrick J. Chiodini et al.   PLoS One

Review article: breath analysis in inflammatory bowel diseases

(2014) S. Kurada et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Defining dysbiosis and its influence on host immunity and disease

(2014) Charisse Petersen et al.   CELLULAR MICROBIOLOGY

Detection of Listeria in milk using non-targeted metabolic profiling of Listeria monocytogenes: A proof-of-concept application

(2014) David J. Beale et al.   FOOD CONTROL

Bacterial protein signals are associated with Crohn’s disease

(2014) Catherine Juste et al.   GUT

Inflammatory Bowel Disease as a Model for Translating the Microbiome

(2014) Curtis Huttenhower et al.   IMMUNITY

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

(2014) Clarissa Schwab et al.   ISME Journal

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

(2014) Michelle G Rooks et al.   ISME Journal

The microbial basis of inflammatory bowel diseases

(2014) Sushila R. Dalal et al.   JOURNAL OF CLINICAL INVESTIGATION

Metabonomics of human fecal extracts characterize ulcerative colitis, Crohn’s disease and healthy individuals

(2014) Jacob Tveiten Bjerrum et al.   Metabolomics

Improved Metabolic Health Alters Host Metabolism in Parallel with Changes in Systemic Xeno-Metabolites of Gut Origin

(2014) Caitlin Campbell et al.   PLoS One

Metabolomics Analysis Identifies Intestinal Microbiota-Derived Biomarkers of Colonization Resistance in Clindamycin-Treated Mice

(2014) Robin L. P. Jump et al.   PLoS One

Bacterial Bile Metabolising Gene Abundance in Crohn's, Ulcerative Colitis and Type 2 Diabetes Metagenomes

(2014) Alain Labbé et al.   PLoS One

The murine appendiceal microbiome is altered in spontaneous colitis and its pathological progression

(2014) Sultan Alkadhi et al.   Gut Pathogens

Association of gut microbiota with post-operative clinical course in Crohn’s disease

(2013) Neelendu Dey et al.   BMC GASTROENTEROLOGY

Implications of the human microbiome in inflammatory bowel diseases

(2013) Syeda M. Bakhtiar et al.   FEMS MICROBIOLOGY LETTERS

Complex Interactions Among Diet, Gastrointestinal Transit, and Gut Microbiota in Humanized Mice

(2013) Purna C. Kashyap et al.   GASTROENTEROLOGY

Exploring host-microbiota interactions in animal models and humans

(2013) A. D. Kostic et al.   GENES & DEVELOPMENT

Increased Proportions of Bifidobacterium and the Lactobacillus Group and Loss of Butyrate-Producing Bacteria in Inflammatory Bowel Disease

(2013) W. Wang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of Adherent Bacteroidales from Intestinal Biopsies of Children and Young Adults with Inflammatory Bowel Disease

(2013) Naamah L. Zitomersky et al.   PLoS One

Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition

(2013) S. Kishino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiota regulation of inflammatory bowel disease and colorectal cancer

(2013) Zhanju Liu et al.   SEMINARS IN CANCER BIOLOGY

Microbiotas from UC patients display altered metabolism and reduced ability of LAB to colonize mucus

(2013) Louise Kristine Vigsnaes et al.   Scientific Reports

Metabolic profiling reveals new serum biomarkers for differentiating diabetic nephropathy

(2012) Akiyoshi Hirayama et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Amino Acid Starvation Induced by Invasive Bacterial Pathogens Triggers an Innate Host Defense Program

(2012) Ivan Tattoli et al.   Cell Host & Microbe

Metabolomic analysis of Cryptosporidium parvum oocysts in water: A proof of concept demonstration

(2012) David J. Beale et al.   ENVIRONMENTAL POLLUTION

Development of an untargeted metabolomics method for the analysis of human faecal samples using Cryptosporidium-infected samples

(2012) Josephine Su Yin Ng et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The gut microbiota in IBD

(2012) Chaysavanh Manichanh et al.   Nature Reviews Gastroenterology & Hepatology

IBD—what role do Proteobacteria play?

(2012) Indrani Mukhopadhya et al.   Nature Reviews Gastroenterology & Hepatology

Gut microbial adaptation to dietary consumption of fructose, artificial sweeteners and sugar alcohols: implications for host-microbe interactions contributing to obesity

(2012) A. N. Payne et al.   Obesity Reviews

Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer

(2012) Weiguang Chen et al.   PLoS One

Susceptibility towards Enterotoxigenic Escherichia coli F4ac Diarrhea Is Governed by the MUC13 Gene in Pigs

(2012) Jun Ren et al.   PLoS One

Inflammation Drives Dysbiosis and Bacterial Invasion in Murine Models of Ileal Crohn’s Disease

(2012) Melanie Craven et al.   PLoS One

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Host-Gut Microbiota Metabolic Interactions

(2012) J. K. Nicholson et al.   SCIENCE

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

Intestinal secretory cell ER stress and inflammation: Figure 1

(2011) Michael A. McGuckin et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

The Commensal Microbiota and Enteropathogens in the Pathogenesis of Inflammatory Bowel Diseases

(2011) Benoit Chassaing et al.   GASTROENTEROLOGY

Twin Study Indicates Loss of Interaction Between Microbiota and Mucosa of Patients With Ulcerative Colitis

(2011) Patricia Lepage et al.   GASTROENTEROLOGY

Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

(2011) Natalie A. Molodecky et al.   GASTROENTEROLOGY

GC/MS-based profiling of amino acids and TCA cycle-related molecules in ulcerative colitis

(2011) Makoto Ooi et al.   INFLAMMATION RESEARCH

GCMS-based metabolomic study in mice with colitis induced by dextran sulfate sodium

(2011) Yuuki Shiomi et al.   INFLAMMATORY BOWEL DISEASES

Ectopic expression of blood type antigens in inflamed mucosa with higher incidence of FUT2 secretor status in colonic Crohn’s disease

(2011) Jun Miyoshi et al.   JOURNAL OF GASTROENTEROLOGY

Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis

(2011) Akira Andoh et al.   JOURNAL OF GASTROENTEROLOGY

Peripheral education of the immune system by colonic commensal microbiota

(2011) Stephanie K. Lathrop et al.   NATURE

Genetics and pathogenesis of inflammatory bowel disease

(2011) Bernard Khor et al.   NATURE

Gastrointestinal dysfunction contributes to weight loss in Huntington's disease mice

(2011) Jorien M.M. van der Burg et al.   NEUROBIOLOGY OF DISEASE

Enterohepatic Helicobacter in Ulcerative Colitis: Potential Pathogenic Entities?

(2011) John M. Thomson et al.   PLoS One

L-Fucose utilization provides Campylobacter jejuni with a competitive advantage

(2011) M. Stahl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice

(2011) A. L. Goodman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Selection of Bifidobacteria Based on Adhesion and Anti-Inflammatory Capacity In Vitro for Amelioration of Murine Colitis

(2010) J. Preising et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

1H NMR-based metabonomic assessment of probiotic effects in a colitis mouse model

(2010) Young-Shick Hong et al.   ARCHIVES OF PHARMACAL RESEARCH

Fermentative metabolism by the human gut microbiota

(2010) A. Bernalier-Donadille   GASTROENTEROLOGIE CLINIQUE ET BIOLOGIQUE

A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

(2010) Ben P. Willing et al.   GASTROENTEROLOGY

Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease

(2010) Dermot P.B. McGovern et al.   HUMAN MOLECULAR GENETICS

Distinct and overlapping genetic loci in crohnʼs disease and ulcerative colitis: Correlations with pathogenesis

(2010) Matti Waterman et al.   INFLAMMATORY BOWEL DISEASES

Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis

(2010) Nabeetha A. Nagalingam et al.   INFLAMMATORY BOWEL DISEASES

Western-style diets induce macrophage infiltration and contribute to colitis-associated carcinogenesis

(2010) In-Wha Kim et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

An intestinal epithelial defect conferring ER stress results in inflammation involving both innate and adaptive immunity

(2010) R D Eri et al.   Mucosal Immunology

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparison of the prevalence of fructose and lactose malabsorption across chronic intestinal disorders

(2009) J. S. BARRETT et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

An Escherichia coli aer mutant exhibits a reduced ability to colonize the streptomycin-treated mouse large intestine

(2009) Shelley M. Horne et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers

(2009) Lotta Krogius-Kurikka et al.   BMC GASTROENTEROLOGY

Microbial Volatile Organic Compounds

(2009) Anne Korpi et al.   CRITICAL REVIEWS IN TOXICOLOGY

Culture-independent analysis of desulfovibrios in the human distal colon of healthy, colorectal cancer and polypectomized individuals

(2009) Pauline D. Scanlan et al.   FEMS MICROBIOLOGY ECOLOGY

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Community-Wide Response of the Gut Microbiota to Enteropathogenic Citrobacter rodentium Infection Revealed by Deep Sequencing

(2009) C. Hoffmann et al.   INFECTION AND IMMUNITY

Bifidobacterium animalis causes extensive duodenitis and mild colonic inflammation in monoassociated interleukin-10-deficient mice

(2009) James P. Moran et al.   INFLAMMATORY BOWEL DISEASES

Butyrate utilization by the colonic mucosa in inflammatory bowel diseases

(2009) Ronan Thibault et al.   INFLAMMATORY BOWEL DISEASES

Mammalian polyamine metabolism and function

(2009) Anthony E. Pegg   IUBMB LIFE

Recognition of Blood Group ABH Type 1 Determinants by the FedF Adhesin of F18-fimbriatedEscherichia coli

(2009) Annelies Coddens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Colonic fermentation – More than meets the nose

(2009) R.P. Arasaradnam et al.   MEDICAL HYPOTHESES

Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease

(2009) Janet Jansson et al.   PLoS One

Isolation and characterization of fructophilic lactic acid bacteria from fructose-rich niches

(2009) Akihito Endo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Plasma lipids and inflammation in active inflammatory bowel diseases

(2008) G. ROMANATO et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Irinotecan-induced mucositis is associated with changes in intestinal mucins

(2008) Andrea M. Stringer et al.   CANCER CHEMOTHERAPY AND PHARMACOLOGY

Metagenomic Approaches for Defining the Pathogenesis of Inflammatory Bowel Diseases

(2008) Daniel A. Peterson et al.   Cell Host & Microbe

Microbial Influences in Inflammatory Bowel Diseases

(2008) R. Balfour Sartor   GASTROENTEROLOGY

Dietary Histidine Ameliorates Murine Colitis by Inhibition of Proinflammatory Cytokine Production From Macrophages

(2008) Ayatoshi Andou et al.   GASTROENTEROLOGY

NF-κB in inflammatory bowel disease

(2008) I. Atreya et al.   JOURNAL OF INTERNAL MEDICINE

Metabolism of the colonic mucosa in patients with inflammatory bowel diseases: an in vitro proton magnetic resonance spectroscopy study

(2008) Krithika Balasubramanian et al.   MAGNETIC RESONANCE IMAGING

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Aberrant Mucin Assembly in Mice Causes Endoplasmic Reticulum Stress and Spontaneous Inflammation Resembling Ulcerative Colitis

(2008) Chad K Heazlewood et al.   PLOS MEDICINE

Multifaceted transcriptional regulation of the murine intestinal mucus layer by endogenous microbiota

(2007) Elena M. Comelli et al.   GENOMICS

Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease

(2007) Hiromasa Takaishi et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY