Genetic and epigenetic coordination of cortical interneuron development

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

(2021) Rongxin Fang et al.   Nature Communications

Characterizing chromatin landscape from aggregate and single-cell genomic assays using flexible duration modeling

(2020) Mariano I. Gabitto et al.   Nature Communications

Maf and Mafb control mouse pallial interneuron fate and maturation through neuropsychiatric disease gene regulation

(2020) Emily Ling-Lin Pai et al.   eLife

An Activity-Mediated Transition in Transcription in Early Postnatal Neurons

(2020) Hume Stroud et al.   NEURON

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

(2020) Sai Ma et al.   CELL

Genes influenced by MEF2C contribute to neurodevelopmental disease via gene expression changes that affect multiple types of cortical excitatory neurons

(2020) Donna Cosgrove et al.   HUMAN MOLECULAR GENETICS

Multi-study inference of regulatory networks for more accurate models of gene regulation

(2019) Dayanne M. Castro et al.   PLoS Computational Biology

Mafb and c-Maf Have Prenatal Compensatory and Postnatal Antagonistic Roles in Cortical Interneuron Fate and Function

(2019) Emily Ling-Lin Pai et al.   Cell Reports

Characterization of cell fate probabilities in single-cell data with Palantir

(2019) Manu Setty et al.   NATURE BIOTECHNOLOGY

The accessible chromatin landscape of the murine hippocampus at single-cell resolution

(2019) John R. Sinnamon et al.   GENOME RESEARCH

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Joint analysis of heterogeneous single-cell RNA-seq dataset collections

(2019) Nikolas Barkas et al.   NATURE METHODS

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

(2018) Kelly Street et al.   BMC GENOMICS

Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch

(2018) Nan Liu et al.   CELL

Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation

(2018) Sebastian Preissl et al.   NATURE NEUROSCIENCE

Early emergence of cortical interneuron diversity in the mouse embryo

(2018) Da Mi et al.   SCIENCE

Genomic insights into chromatin reprogramming to totipotency in embryos

(2018) Sabrina Ladstätter et al.   JOURNAL OF CELL BIOLOGY

Developmental diversification of cortical inhibitory interneurons

(2018) Christian Mayer et al.   NATURE

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

(2016) Itay Tirosh et al.   NATURE

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits

(2016) Robin Tremblay et al.   NEURON

MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders

(2016) Adam J Harrington et al.   eLife

Clonally Related Forebrain Interneurons Disperse Broadly across Both Functional Areas and Structural Boundaries

(2015) Christian Mayer et al.   NEURON

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

(2015) Alisa Mo et al.   NEURON

Wide Dispersion and Diversity of Clonally Related Inhibitory Interneurons

(2015) Corey C. Harwell et al.   NEURON

Interneuron cell types are fit to function

(2014) Adam Kepecs et al.   NATURE

New insights into the classification and nomenclature of cortical GABAergic interneurons

(2013) Javier DeFelipe et al.   NATURE REVIEWS NEUROSCIENCE

A Modular Gain-of-Function Approach to Generate Cortical Interneuron Subtypes from ES Cells

(2013) Edmund Au et al.   NEURON

GABAergic Interneuron Lineages Selectively Sort into Specific Cortical Layers during Early Postnatal Development

(2010) Goichi Miyoshi et al.   CEREBRAL CORTEX

Dlx5 and Dlx6 Regulate the Development of Parvalbumin-Expressing Cortical Interneurons

(2010) Y. Wang et al.   JOURNAL OF NEUROSCIENCE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development

(2009) Eiman Azim et al.   NATURE NEUROSCIENCE

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain

(2009) Linda Madisen et al.   NATURE NEUROSCIENCE

The Cell-Intrinsic Requirement of Sox6 for Cortical Interneuron Development

(2009) Renata Batista-Brito et al.   NEURON

Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex

(2008)   NATURE REVIEWS NEUROSCIENCE

A spatial bias for the origins of interneuron subgroups within the medial ganglionic eminence

(2007) Carl P. Wonders et al.   DEVELOPMENTAL BIOLOGY