Host genetics, phenotype and geography structure the microbiome of a foundational seaweed

Host genetics, phenotype and geography structure the microbiome of a foundational seaweed

(2022) Georgina Wood et al.   MOLECULAR ECOLOGY

Accumulation of detached kelp biomass in a subtidal temperate coastal ecosystem induces succession of epiphytic and sediment bacterial communities.

(2021) Maéva Brunet et al.   ENVIRONMENTAL MICROBIOLOGY

Dynamic shift of the epibacterial communities on commercially cultivated Saccharina japonica from mature sporophytes to sporelings and juvenile sporophytes

(2021) Qi Han et al.   JOURNAL OF APPLIED PHYCOLOGY

Genomic vulnerability of a dominant seaweed points to future‐proofing pathways for Australia's underwater forests

(2021) Georgina Wood et al.   GLOBAL CHANGE BIOLOGY

A community perspective on the concept of marine holobionts: current status, challenges, and future directions

(2021) Simon M. Dittami et al.   PeerJ

Molecular analysis of a fungal disease in the habitat forming brown macroalga Phyllospora comosa (Fucales) along a latitudinal gradient

(2021) Juliana Ferrari et al.   JOURNAL OF PHYCOLOGY

Assessing the potential to harness the microbiome through plant genetics

(2021) Joy Bergelson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Host population genetics and biogeography structure the microbiome of the sponge Cliona delitrix

(2020) Cole G. Easson et al.   Ecology and Evolution

Operation Crayweed: Ecological and sociocultural aspects of restoring Sydney’s underwater forests

(2020) Adriana Vergés et al.   ECOLOGICAL MANAGEMENT & RESTORATION

Using genomics to design and evaluate the performance of underwater forest restoration

(2020) Georgina Wood et al.   JOURNAL OF APPLIED ECOLOGY

Giant kelp microbiome altered in the presence of epiphytes

(2020) Anna K. James et al.   Limnology and Oceanography Letters

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata

(2020) Maureen W. Ihua et al.   PLoS One

Oxygen metabolism shapes microbial settlement on photosynthetic kelp blades compared to artificial kelp substrates

(2020) Brooke L. Weigel et al.   Environmental Microbiology Reports

Chemically Mediated Microbial “Gardening” Capacity of a Seaweed Holobiont Is Dynamic

(2020) Mahasweta Saha et al.   Microorganisms

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome

(2019) Joy Bergelson et al.   Scientific Reports

Successional Dynamics and Seascape-Level Patterns of Microbial Communities on the Canopy-Forming Kelps Nereocystis luetkeana and Macrocystis pyrifera

(2019) Brooke L. Weigel et al.   Frontiers in Microbiology

Interactions within the microbiome alter microbial interactions with host chemical defences and affect disease in a marine holobiont

(2019) Sharon R. Longford et al.   Scientific Reports

Measuring continuous compositional change using decline and decay in zeta diversity

(2019) Melodie A. Mcgeoch et al.   ECOLOGY

Host genetics and geography influence microbiome composition in the sponge Ircinia campana

(2019) Sarah M. Griffiths et al.   JOURNAL OF ANIMAL ECOLOGY

Harnessing synthetic biology for kelp forest conservation

(2019) Melinda A. Coleman et al.   JOURNAL OF PHYCOLOGY

The potential of genomics for restoring ecosystems and biodiversity

(2019) Martin F. Breed et al.   NATURE REVIEWS GENETICS

Coral microbiome dynamics, functions and design in a changing world

(2019) Madeleine J. H. van Oppen et al.   NATURE REVIEWS MICROBIOLOGY

Microbial communities in the tropical air ecosystem follow a precise diel cycle

(2019) Elena S. Gusareva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host-associated microbiomes drive structure and function of marine ecosystems

(2019) Laetitia G. E. Wilkins et al.   PLOS BIOLOGY

A horizon scan of priorities for coastal marine microbiome research

(2019) Stacey M. Trevathan-Tackett et al.   Nature Ecology & Evolution

A common garden experiment with Porphyra umbilicalis (Rhodophyta) evaluates methods to study spatial differences in the macroalgal microbiome

(2018) Charlotte T C Quigley et al.   JOURNAL OF PHYCOLOGY

Functional biogeography and host specificity of bacterial communities associated with the Marine Green Alga Ulva spp.

(2018) Alexandra J. Roth-Schulze et al.   MOLECULAR ECOLOGY

Incubation with macroalgae induces large shifts in water column microbiota, but minor changes to the epibiota of co-occurring macroalgae

(2018) Melissa Y. Chen et al.   MOLECULAR ECOLOGY

dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

(2018) Bernd Gruber et al.   Molecular Ecology Resources

The hologenome concept of evolution after 10 years

(2018) Eugene Rosenberg et al.   Microbiome

Coastal urbanisation affects microbial communities on a dominant marine holobiont

(2018) Ezequiel M. Marzinelli et al.   npj Biofilms and Microbiomes

OUP accepted manuscript

(2018)   ICES JOURNAL OF MARINE SCIENCE

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions

(2018) Kathleen Beilsmith et al.   PLANT JOURNAL

Rethinking the Coral Microbiome: Simplicity Exists within a Diverse Microbial Biosphere

(2018) Alejandra Hernandez-Agreda et al.   mBio

Latitudinal variation in the microbiome of the sponge Ircinia campana correlates with host haplotype but not anti-predatory chemical defense

(2017) CM Marino et al.   MARINE ECOLOGY PROGRESS SERIES

Forgotten underwater forests: The key role of fucoids on Australian temperate reefs

(2017) Melinda A. Coleman et al.   Ecology and Evolution

Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning

(2017) John Vollmers et al.   Frontiers in Microbiology

Latitudinal variation in the microbiome of the sponge Ircinia campana correlates with host haplotype but not anti-predatory chemical defense

(2017) CM Marino et al.   MARINE ECOLOGY PROGRESS SERIES

Partitioning of functional and taxonomic diversity in surface-associated microbial communities

(2016) Alexandra J. Roth-Schulze et al.   ENVIRONMENTAL MICROBIOLOGY

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota

(2016) Jun Wang et al.   NATURE GENETICS

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

(2016) Jesse R. Zaneveld et al.   Nature Communications

Unraveling the Functions of the Macroalgal Microbiome

(2016) Ravindra Pal Singh et al.   Frontiers in Microbiology

Genotypic richness predicts phenotypic variation in an endangered clonal plant

(2016) Suzanna M. Evans et al.   PeerJ

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography

(2015) Ezequiel M. Marzinelli et al.   ENVIRONMENTAL MICROBIOLOGY

Phenotypic plasticity and biogeographic variation in physiology of habitat-forming seaweed: response to temperature and nitrate

(2015) Emma B. Flukes et al.   JOURNAL OF PHYCOLOGY

Shallow phylogeographic histories of key species in a biodiversity hotspot

(2015) Halley M.S. Durrant et al.   PHYCOLOGIA

Building coral reef resilience through assisted evolution

(2015) Madeleine J. H. van Oppen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Does restoration of a habitat-forming seaweed restore associated faunal diversity?

(2015) Ezequiel M. Marzinelli et al.   RESTORATION ECOLOGY

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Spatial variability of microbial assemblages associated with a dominant habitat-forming seaweed

(2015) Alexandra H. Campbell et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Vegetation restoration and prevention of coastal sand dunes erosion using ion exchange resins and the plant growth-promoting rhizobacteria Bacillus sp. SH1RP8 isolated from indigenous plants

(2014) Sun Hwa Hong et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Towards Restoration of Missing Underwater Forests

(2014) Alexandra H. Campbell et al.   PLoS One

Biogeographic patterns in ocean microbes emerge in a neutral agent-based model

(2014) F. L. Hellweger et al.   SCIENCE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Demographic consequences of disease in a habitat-forming seaweed and impacts on interactions between natural enemies

(2013) Alexandra H. Campbell et al.   ECOLOGY

Advances in plant growth-promoting bacterial inoculant technology: formulations and practical perspectives (1998–2013)

(2013) Yoav Bashan et al.   PLANT AND SOIL

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide mapping of gene–microbiota interactions in susceptibility to autoimmune skin blistering

(2013) Girish Srinivas et al.   Nature Communications

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities

(2012) Franciska T. de Vries et al.   ECOLOGY LETTERS

What we can learn from sushi: a review on seaweed-bacterial associations

(2012) Joke Hollants et al.   FEMS MICROBIOLOGY ECOLOGY

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Pole-to-pole biogeography of surface and deep marine bacterial communities

(2012) J.-F. Ghiglione et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Second Skin: Ecological Role of Epibiotic Biofilms on Marine Organisms

(2012) Martin Wahl et al.   Frontiers in Microbiology

Climate change and disease: bleaching of a chemically defended seaweed

(2011) ALEXANDRA H. CAMPBELL et al.   GLOBAL CHANGE BIOLOGY

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Utilization of kelp-derived carbon sources by kelp surface-associated bacteria

(2010) MM Bengtsson et al.   AQUATIC MICROBIAL ECOLOGY

Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes

(2010) Meenu Tyagi et al.   BIODEGRADATION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Epibacterial community patterns on marine macroalgae are host-specific but temporally variable

(2010) Tim Lachnit et al.   ENVIRONMENTAL MICROBIOLOGY

Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis

(2010) Catherine Burke et al.   ISME Journal

Chemical interactions between marine macroalgae and bacteria

(2010) F Goecke et al.   MARINE ECOLOGY PROGRESS SERIES

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

(2010) A. K. Benson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specific epibacterial communities on macroalgae: phylogeny matters more than habitat

(2009) T Lachnit et al.   Aquatic Biology

Unlocking the diversity and biotechnological potential of marine surface associated microbial communities

(2008) Suhelen Egan et al.   CURRENT OPINION IN MICROBIOLOGY

ABSENCE OF A LARGE BROWN MACROALGA ON URBANIZED ROCKY REEFS AROUND SYDNEY, AUSTRALIA, AND EVIDENCE FOR HISTORICAL DECLINE1

(2008) Melinda A. Coleman et al.   JOURNAL OF PHYCOLOGY