Transcriptional and chromatin-based partitioning mechanisms uncouple protein scaling from cell size

Transcription coordinates histone amounts and genome content

(2021) Kora-Lee Claude et al.   Nature Communications

Size-Dependent Increase in RNA Polymerase II Initiation Rates Mediates Gene Expression Scaling with Cell Size

(2020) Xi-Ming Sun et al.   CURRENT BIOLOGY

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

(2020) Zohar Shipony et al.   NATURE METHODS

Differential Scaling of Gene Expression with Cell Size May Explain Size Control in Budding Yeast

(2020) Yuping Chen et al.   MOLECULAR CELL

Cell-size regulation in budding yeast does not depend on linear accumulation of Whi5

(2020) Felix Barber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Excessive Cell Growth Causes Cytoplasm Dilution And Contributes to Senescence

(2019) Gabriel E. Neurohr et al.   CELL

Differential scaling between G1 protein production and cell size dynamics promotes commitment to the cell division cycle in budding yeast

(2019) Athanasios Litsios et al.   NATURE CELL BIOLOGY

Cell Cycle Inhibitor Whi5 Records Environmental Information to Coordinate Growth and Division in Yeast

(2019) Yimiao Qu et al.   Cell Reports

Cell Size and Growth Rate Are Modulated by TORC2-Dependent Signals

(2018) Rafael Lucena et al.   CURRENT BIOLOGY

G1/S Transcription Factor Copy Number Is a Growth-Dependent Determinant of Cell Cycle Commitment in Yeast

(2018) Savanna Dorsey et al.   Cell Systems

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information

(2018) Antonia Lock et al.   NUCLEIC ACIDS RESEARCH

Dilution and titration of cell-cycle regulators may control cell size in budding yeast

(2018) Frank S. Heldt et al.   PLoS Computational Biology

An improved MS2 system for accurate reporting of the mRNA life cycle

(2017) Evelina Tutucci et al.   NATURE METHODS

Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms

(2015) Olivia Padovan-Merhar et al.   MOLECULAR CELL

Dilution of the cell cycle inhibitor Whi5 controls budding-yeast cell size

(2015) Kurt M. Schmoller et al.   NATURE

Large-Scale Genetic Perturbations Reveal Regulatory Networks and an Abundance of Gene-Specific Repressors

(2014) Patrick Kemmeren et al.   CELL

Heritability and genetic basis of protein level variation in an outbred population

(2014) Leopold Parts et al.   GENOME RESEARCH

Cell cycle population effects in perturbation studies

(2014) E. O'Duibhir et al.   Molecular Systems Biology

Systematic identification of cell size regulators in budding yeast

(2014) I. Soifer et al.   Molecular Systems Biology

Repression of G1/S Transcription Is Mediated via Interaction of the GTB Motifs of Nrm1 and Whi5 with Swi6

(2013) A. Travesa et al.   MOLECULAR AND CELLULAR BIOLOGY

An Algorithm to Automate Yeast Segmentation and Tracking

(2013) Andreas Doncic et al.   PLoS One

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Quantitative Analysis of Fission Yeast Transcriptomes and Proteomes in Proliferating and Quiescent Cells

(2012) Samuel Marguerat et al.   CELL

Cell Size Control in Yeast

(2012) Jonathan J. Turner et al.   CURRENT BIOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Single-mRNA counting using fluorescent in situ hybridization in budding yeast

(2012) Tatjana Trcek et al.   Nature Protocols

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Coordinating genome expression with cell size

(2012) Samuel Marguerat et al.   TRENDS IN GENETICS

A Systematic Analysis of Cell Cycle Regulators in Yeast Reveals That Most Factors Act Independently of Cell Size to Control Initiation of Division

(2012) Scott A. Hoose et al.   PLoS Genetics

Distinct Interactions Select and Maintain a Specific Cell Fate

(2011) Andreas Doncic et al.   MOLECULAR CELL

Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change

(2011) Umut Eser et al.   MOLECULAR CELL

A Coordinated Global Control over Cellular Transcription

(2010) Jacob Zhurinsky et al.   CURRENT BIOLOGY

The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle

(2010) Francisco Ferrezuelo et al.   GENOME BIOLOGY

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Drosophilaneuroblast asymmetric divisions: cell cycle regulators, asymmetric protein localization, and tumorigenesis: Figure 1.

(2008) William Chia et al.   JOURNAL OF CELL BIOLOGY

Positive feedback of G1 cyclins ensures coherent cell cycle entry

(2008) Jan M. Skotheim et al.   NATURE

Single-RNA counting reveals alternative modes of gene expression in yeast

(2008) Daniel Zenklusen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY