HLA class I molecular variation and peptide-binding properties suggest a model of joint divergent asymmetric selection

Automated benchmarking of peptide-MHC class I binding predictions

(2015) Thomas Trolle et al.   BIOINFORMATICS

Environmental variation and rivers govern the structure of chimpanzee genetic diversity in a biodiversity hotspot

(2015) Matthew W Mitchell et al.   BMC EVOLUTIONARY BIOLOGY

HLA supertype variation across populations: new insights into the role of natural selection in the evolution of HLA-A and HLA-B polymorphisms

(2015) Rodrigo dos Santos Francisco et al.   IMMUNOGENETICS

Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most?

(2015) Hanneke W. M. van Deutekom et al.   IMMUNOGENETICS

A limit to the divergent allele advantage model supported by variable pathogen recognition across HLA-DRB1 allele lineages

(2015) Q. Lau et al.   TISSUE ANTIGENS

Signature Patterns of MHC Diversity in Three Gombe Communities of Wild Chimpanzees Reflect Fitness in Reproduction and Immune Defense against SIVcpz

(2015) Emily E. Wroblewski et al.   PLOS BIOLOGY

Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding

(2015) Paul E Chappell et al.   eLife

Implementing a Class of Permutation Tests: ThecoinPackage

(2015) Torsten Hothorn et al.   Journal of Statistical Software

A New HLA Map of Europe: Regional Genetic Variation and Its Implication for Peopling History, Disease-Association Studies and Tissue Transplantation

(2014) Alicia Sanchez-Mazas et al.   HUMAN HEREDITY

Global distribution of malaria-resistant MHC-HLA alleles: the number and frequencies of alleles and malaria risk

(2014) László Garamszegi   MALARIA JOURNAL

The IPD and IMGT/HLA database: allele variant databases

(2014) James Robinson et al.   NUCLEIC ACIDS RESEARCH

TheHLA-net GENE[RATE]pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas

(2014) J. M. Nunes et al.   TISSUE ANTIGENS

Amino acid substitution at peptide-binding pockets of HLA class I molecules increases risk of severe acute GVHD and mortality

(2013) J. Pidala et al.   BLOOD

HLA and MICA polymorphism in Polynesians and New Zealand Maori: Implications for ancestry and health

(2013) H.A. Edinur et al.   HUMAN IMMUNOLOGY

MHCcluster, a method for functional clustering of MHC molecules

(2013) Martin Thomsen et al.   IMMUNOGENETICS

Co-evolution of Human Leukocyte Antigen (HLA) Class I Ligands with Killer-Cell Immunoglobulin-Like Receptors (KIR) in a Genetically Diverse Population of Sub-Saharan Africans

(2013) Paul J. Norman et al.   PLoS Genetics

A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric

(2012) P. G. Bronson et al.   HUMAN MOLECULAR GENETICS

Distinct evolutionary strategies of human leucocyte antigen loci in pathogen-rich environments

(2012) A. Sanchez-Mazas et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Human-specific evolution of killer cell immunoglobulin-like receptor recognition of major histocompatibility complex class I molecules

(2012) P. Parham et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Predicting peptide binding to Major Histocompatibility Complex molecules

(2011) Webber W.P. Liao et al.   AUTOIMMUNITY REVIEWS

Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools

(2011) L. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

COMPUTATIONAL PREDICTION OF MHC II-ANTIGEN BINDING SUPPORTS DIVERGENT ALLELE ADVANTAGE AND EXPLAINS TRANS-SPECIES POLYMORPHISM

(2011) Tobias L. Lenz   EVOLUTION

Signatures of historical demography and pathogen richness on MHC class I genes

(2011) Nouar Qutob et al.   IMMUNOGENETICS

HLA class I allele promiscuity revisited

(2011) Xiangyu Rao et al.   IMMUNOGENETICS

Immunogenetics as a tool in anthropological studies

(2011) Alicia Sanchez-Mazas et al.   IMMUNOLOGY

The MHC, disease and selection

(2011) John Trowsdale   IMMUNOLOGY LETTERS

HLA DNA Sequence Variation among Human Populations: Molecular Signatures of Demographic and Selective Events

(2011) Stéphane Buhler et al.   PLoS One

Predicting Peptide Binding Affinities to MHC Molecules Using a Modified Semi-Empirical Scoring Function

(2011) Webber W. P. Liao et al.   PLoS One

Predicting MHC class I epitopes in large datasets

(2010) Kirsten Roomp et al.   BMC BIOINFORMATICS

Major histocompatibility complex class I binding predictions as a tool in epitope discovery

(2010) Claus Lundegaard et al.   IMMUNOLOGY

MHC heterozygosity and survival in red junglefowl

(2010) KIRSTY WORLEY et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings

(2010) L. G. Spurgin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Disentangling the role of MHC-dependent ‘good genes' and ‘compatible genes' in mate-choice decisions of three-spined sticklebacks Gasterosteus aculeatus under semi-natural conditions

(2009) T. L. Lenz et al.   JOURNAL OF FISH BIOLOGY

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

(2008) Hao Zhang et al.   BIOINFORMATICS

HLA class I supertypes: a revised and updated classification

(2008) John Sidney et al.   BMC IMMUNOLOGY

Balancing selection and heterogeneity across the classical human leukocyte antigen loci: A meta-analytic review of 497 population studies

(2008) Owen D. Solberg et al.   HUMAN IMMUNOLOGY

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

Human leucocyte antigen (HLA) expression of primary trophoblast cells and placental cell lines, determined using single antigen beads to characterize allotype specificities of anti-HLA antibodies

(2008) Richard Apps et al.   IMMUNOLOGY

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

(2008) Claus Lundegaard et al.   NUCLEIC ACIDS RESEARCH

Does intra-individual major histocompatibility complex diversity keep a golden mean?

(2008) B. Woelfing et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES