Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

(2010) Andrew J Bordner et al.   BMC BIOINFORMATICS

MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

(2010) Andrew J. Bordner et al.   BMC BIOINFORMATICS

Peptide binding predictions for HLA DR, DP and DQ molecules

(2010) Peng Wang et al.   BMC BIOINFORMATICS

Predicting MHC-II Binding Affinity Using Multiple Instance Regression

(2010) Yasser EL-Manzalawy et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

NetCTLpan: pan-specific MHC class I pathway epitope predictions

(2010) Thomas Stranzl et al.   IMMUNOGENETICS

MHC Class II epitope predictive algorithms

(2010) Morten Nielsen et al.   IMMUNOLOGY

Major histocompatibility complex class I binding predictions as a tool in epitope discovery

(2010) Claus Lundegaard et al.   IMMUNOLOGY

MetaMHC: a meta approach to predict peptides binding to MHC molecules

(2010) Xihao Hu et al.   NUCLEIC ACIDS RESEARCH

The IMGT/HLA database

(2010) J. Robinson et al.   NUCLEIC ACIDS RESEARCH

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

(2009) Hao Zhang et al.   BIOINFORMATICS

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

(2009) Morten Nielsen et al.   BMC BIOINFORMATICS

Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview

(2009) Esther Lafuente et al.   CURRENT PHARMACEUTICAL DESIGN

The Immune Epitope Database 2.0

(2009) Randi Vita et al.   NUCLEIC ACIDS RESEARCH

IPD—the Immuno Polymorphism Database

(2009) James Robinson et al.   NUCLEIC ACIDS RESEARCH

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

(2008) Hao Zhang et al.   BIOINFORMATICS

Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research

(2008) Hong Lin et al.   BMC IMMUNOLOGY

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

Shift-Invariant Adaptive Double Threading: Learning MHC II–Peptide Binding

(2008) Noah Zaitlen et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Immune epitope database analysis resource (IEDB-AR)

(2008) Q. Zhang et al.   NUCLEIC ACIDS RESEARCH

On Evaluating MHC-II Binding Peptide Prediction Methods

(2008) Yasser EL-Manzalawy et al.   PLoS One

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

(2008) Morten Nielsen et al.   PLoS Computational Biology

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

(2008) Peng Wang et al.   PLoS Computational Biology