Identification of Iron-Sulfur (Fe-S) Cluster and Zinc (Zn) Binding Sites Within Proteomes Predicted by DeepMind’s AlphaFold2 Program Dramatically Expands the Metalloproteome
出版年份 2021 全文链接
标题
Identification of Iron-Sulfur (Fe-S) Cluster and Zinc (Zn) Binding Sites Within Proteomes Predicted by DeepMind’s AlphaFold2 Program Dramatically Expands the Metalloproteome
作者
关键词
ligands, metalloproteomics, functional annotation, UniProt
出版物
JOURNAL OF MOLECULAR BIOLOGY
Volume 434, Issue 2, Pages 167377
出版商
Elsevier BV
发表日期
2021-11-24
DOI
10.1016/j.jmb.2021.167377
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries
- (2021) Miljan Kuljanin et al. NATURE BIOTECHNOLOGY
- Highly accurate protein structure prediction with AlphaFold
- (2021) John Jumper et al. NATURE
- Highly accurate protein structure prediction for the human proteome
- (2021) Kathryn Tunyasuvunakool et al. NATURE
- Machine learning differentiates enzymatic and non-enzymatic metals in proteins
- (2021) Ryan Feehan et al. Nature Communications
- Improved protein structure prediction using potentials from deep learning
- (2020) Andrew W. Senior et al. NATURE
- UniProt: the universal protein knowledgebase in 2021
- (2020) et al. NUCLEIC ACIDS RESEARCH
- ZincBind—the database of zinc binding sites
- (2019) Sam M Ireland et al. Database-The Journal of Biological Databases and Curation
- HH-suite3 for fast remote homology detection and deep protein annotation
- (2019) Martin Steinegger et al. BMC BIOINFORMATICS
- On the Origin of Iron/Sulfur Cluster Biosynthesis in Eukaryotes
- (2019) Anastasios D. Tsaousis Frontiers in Microbiology
- High Precision Protein Functional Site Detection Using 3D Convolutional Neural Networks
- (2018) Wen Torng et al. BIOINFORMATICS
- Patterns of Ligands Coordinated to Metallocofactors Extracted from the Protein Data Bank
- (2017) Luca Belmonte et al. Journal of Chemical Information and Modeling
- MetalPDB in 2018: a database of metal sites in biological macromolecular structures
- (2017) Valeria Putignano et al. NUCLEIC ACIDS RESEARCH
- CheckMyMetal: a macromolecular metal-binding validation tool
- (2017) Heping Zheng et al. Acta Crystallographica Section D-Structural Biology
- MetalPredator: a web server to predict iron–sulfur cluster binding proteomes
- (2016) Yana Valasatava et al. BIOINFORMATICS
- MIB: Metal Ion-Binding Site Prediction and Docking Server
- (2016) Yu-Feng Lin et al. Journal of Chemical Information and Modeling
- Uniclust databases of clustered and deeply annotated protein sequences and alignments
- (2016) Milot Mirdita et al. NUCLEIC ACIDS RESEARCH
- Predicting Flavin and Nicotinamide Adenine Dinucleotide-Binding Sites in Proteins Using the Fragment Transformation Method
- (2015) Chih-Hao Lu et al. Biomed Research International
- An integrative computational model for large-scale identification of metalloproteins in microbial genomes: a focus on iron–sulfur cluster proteins
- (2014) Johan Estellon et al. Metallomics
- A Competitive Chemical-Proteomic Platform To Identify Zinc-Binding Cysteines
- (2013) Nicholas J. Pace et al. ACS Chemical Biology
- Biochemical Similarities and Differences between the Catalytic [4Fe-4S] Cluster Containing Fumarases FumA and FumB from Escherichia coli
- (2013) Barbara M. A. van Vugt-Lussenburg et al. PLoS One
- Diverse Functional Roles of Reactive Cysteines
- (2012) Nicholas J. Pace et al. ACS Chemical Biology
- FindGeo: a tool for determining metal coordination geometry
- (2012) Claudia Andreini et al. BIOINFORMATICS
- Recognizing Protein-Ligand Binding Sites by Global Structural Alignment and Local Geometry Refinement
- (2012) Ambrish Roy et al. STRUCTURE
- Quantitative reactivity profiling predicts functional cysteines in proteomes
- (2010) Eranthie Weerapana et al. NATURE
- Structural Basis for Delivery of the Intact [Fe2S2] Cluster by Monothiol Glutaredoxin
- (2009) Thomas Iwema et al. BIOCHEMISTRY
- Data mining of metal ion environments present in protein structures
- (2008) Heping Zheng et al. JOURNAL OF INORGANIC BIOCHEMISTRY
- Structural basis for glycyl radical formation by pyruvate formate-lyase activating enzyme
- (2008) J. L. Vey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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