Cellular Effects of 2′,3′-Cyclic Nucleotide Monophosphates in Gram-Negative Bacteria

The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth

(2020) Summer Elshenawy et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

A window into lysogeny: revealing temperate phage biology with transcriptomics

(2020) Siân V. Owen et al.   Microbial Genomics

RNase I Modulates Escherichia coli Motility, Metabolism, and Resistance

(2020) Yashasvika Duggal et al.   ACS Chemical Biology

An RNA Repair Operon Regulated by Damaged tRNAs

(2020) Kevin J. Hughes et al.   Cell Reports

The Salmonella Specific, σE-Regulated, STM1250 and AgsA, Function With the sHsps IbpA and IbpB, to Counter Oxidative Stress and Survive Macrophage Killing

(2019) Claire L. Hews et al.   Frontiers in Cellular and Infection Microbiology

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

RNase I regulates Escherichia coli 2′,3′-cyclic nucleotide monophosphate levels and biofilm formation

(2018) Benjamin M. Fontaine et al.   BIOCHEMICAL JOURNAL

Genotoxic, metabolic, and oxidative stresses regulate the RNA repair operon of Salmonella Typhimurium

(2018) Jennifer E. Kurasz et al.   JOURNAL OF BACTERIOLOGY

Metabolomics analysis of Pseudomonas chlororaphis JK12 algicidal activity under aerobic and micro-aerobic culture condition

(2018) Jaejung Kim et al.   AMB Express

DksA–DnaJ redox interactions provide a signal for the activation of bacterial RNA polymerase

(2018) Ju-Sim Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a Small Molecule Anti-biofilm Agent Against Salmonella enterica

(2018) Jasmine Moshiri et al.   Frontiers in Microbiology

Exploring the Links between Nucleotide Signaling and Quorum Sensing Pathways in Regulating Bacterial Virulence

(2018) Benjamin M. Fontaine et al.   ACS Infectious Diseases

Generation of 2′,3′-Cyclic Phosphate-Containing RNAs as a Hidden Layer of the Transcriptome

(2018) Megumi Shigematsu et al.   Frontiers in Genetics

The Rcs-Regulated Colanic Acid Capsule Maintains Membrane Potential in Salmonella enterica serovar Typhimurium

(2017) Jasmine M. Pando et al.   mBio

More than Enzymes That Make or Break Cyclic Di-GMP—Local Signaling in the Interactome of GGDEF/EAL Domain Proteins of Escherichia coli

(2017) Olga Sarenko et al.   mBio

System-wide detection of protein-small molecule complexes suggests extensive metabolite regulation in plants

(2017) Daniel Veyel et al.   Scientific Reports

Identification of Four Kinds of 2′,3′-cNMPs in Escherichia coli and a Method for Their Preparation

(2016) Ang Liu et al.   ACS Chemical Biology

Evolutionary Adaptation of the Essential tRNA Methyltransferase TrmD to the Signaling Molecule 3′,5′-cAMP in Bacteria

(2016) Yong Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Deletion analysis of RcsC reveals a novel signalling pathway controlling poly-N-acetylglucosamine synthesis and biofilm formation in Escherichia coli

(2015) Ricardo Oropeza et al.   MICROBIOLOGY-SGM

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Identification of cytidine 2′,3′-cyclic monophosphate and uridine 2′,3′-cyclic monophosphate in Pseudomonas fluorescens pfo-1 culture

(2014) Emily Bordeleau et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Measurement of 2′,3′-cyclic nucleotides by liquid chromatography–tandem mass spectrometry in cells

(2014) Heike Bähre et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Wounding stress causes rapid increase in concentration of the naturally occurring 2′,3′-isomers of cyclic guanosine- and cyclic adenosine monophosphate (cGMP and cAMP) in plant tissues

(2014) Thomas Van Damme et al.   PHYTOCHEMISTRY

Defined Single-Gene and Multi-Gene Deletion Mutant Collections in Salmonella enterica sv Typhimurium

(2014) Steffen Porwollik et al.   PLoS One

The myelin membrane-associated enzyme 2′,3′-cyclic nucleotide 3′-phosphodiesterase: on a highway to structure and function

(2014) Arne Raasakka et al.   Neuroscience Bulletin

The immunosuppressive drug azathioprine inhibits biosynthesis of the bacterial signal molecule cyclic-di-GMP by interfering with intracellular nucleotide pool availability

(2013) Davide Antoniani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

A cyclic nucleotide sensitive promoter reporter system suitable for bacteria and plant cells

(2013) Janet I Wheeler et al.   BMC BIOTECHNOLOGY

Cyclic Dinucleotides and the Innate Immune Response

(2013) Olga Danilchanka et al.   CELL

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

(2013) U. Romling et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Identification and quantitation of 2´,3´-cGMP in murine tissues

(2013) Heike Burhenne et al.   BMC Pharmacology & Toxicology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis

(2012) Dimpy Kalia et al.   CHEMICAL SOCIETY REVIEWS

Determination of cyclic guanosine- and cyclic adenosine monophosphate (cGMP and cAMP) in human plasma and animal tissues by solid phase extraction on silica and liquid chromatography–triple quadrupole mass spectrometry

(2012) Thomas Van Damme et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

The Pyrimidine Nucleotide Biosynthetic Pathway Modulates Production of Biofilm Determinants in Escherichia coli

(2012) Marco Garavaglia et al.   PLoS One

2′,3′-cAMP, 3′-AMP, and 2′-AMP inhibit human aortic and coronary vascular smooth muscle cell proliferation via A2B receptors

(2011) Edwin K. Jackson et al.   AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

The myriad roles of cyclic AMP in microbial pathogens: from signal to sword

(2011) Kathleen A. McDonough et al.   NATURE REVIEWS MICROBIOLOGY

Bacteriophage Crosstalk: Coordination of Prophage Induction by Trans-Acting Antirepressors

(2011) Sébastien Lemire et al.   PLoS Genetics

Di-Adenosine Tetraphosphate (Ap4A) Metabolism Impacts Biofilm Formation by Pseudomonas fluorescens via Modulation of c-di-GMP-Dependent Pathways

(2010) R. D. Monds et al.   JOURNAL OF BACTERIOLOGY

T2 Family ribonucleases: ancient enzymes with diverse roles

(2010) Natalie Luhtala et al.   TRENDS IN BIOCHEMICAL SCIENCES

Ca2+-dependent permeability transition regulation in rat brain mitochondria by 2′,3′-cyclic nucleotides and 2′,3′-cyclic nucleotide 3′-phosphodiesterase

(2009) Tamara Azarashvili et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

5-Fluorouracil reduces biofilm formation in Escherichia coli K-12 through global regulator AriR as an antivirulence compound

(2009) Can Attila et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Small RNAs and Small Proteins Involved in Resistance to Cell Envelope Stress and Acid Shock in Escherichia coli: Analysis of a Bar-Coded Mutant Collection

(2009) E. C. Hobbs et al.   JOURNAL OF BACTERIOLOGY

Second messenger signalling governsEscherichia colibiofilm induction upon ribosomal stress

(2009) Alex Boehm et al.   MOLECULAR MICROBIOLOGY

Principles of c-di-GMP signalling in bacteria

(2009) Regine Hengge   NATURE REVIEWS MICROBIOLOGY

2′,3′-Cyclic nucleotide 3′-phosphodiesterase: A novel RNA-binding protein that inhibits protein synthesis

(2008) Michel Gravel et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts

(2007) Heath E. Klock et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS