Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant

Ecological Interactions, Environmental Gradients, and Gene Flow in Local Adaptation

(2021) Xosé López-Goldar et al.   TRENDS IN PLANT SCIENCE

Chromosome-scale assembly of wild barley accession “OUH602”

(2021) Kazuhiro Sato et al.   G3-Genes Genomes Genetics

Reap the crop wild relatives for breeding future crops

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Evolutionary insights into plant breeding

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Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

(2020) C. J. Battey et al.   GENETICS

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(2020) Matthew J.S. Gibson et al.   MOLECULAR ECOLOGY

The barley pan-genome reveals the hidden legacy of mutation breeding

(2020) Murukarthick Jayakodi et al.   NATURE

LFMM 2: Fast and accurate inference of gene-environment associations in genome-wide studies

(2019) Kevin Caye et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic association with high-resolution climate data reveals selection footprints in the genomes of barley landraces across the Iberian Peninsula

(2019) Bruno Contreras-Moreira et al.   MOLECULAR ECOLOGY

Estimating recent migration and population-size surfaces

(2019) Hussein Al-Asadi et al.   PLoS Genetics

Unpacking Conditional Neutrality: Genomic Signatures of Selection on Conditionally Beneficial and Conditionally Deleterious Mutations

(2019) Jonathan A. Mee et al.   AMERICAN NATURALIST

A Likelihood-Free Estimator of Population Structure Bridging Admixture Models and Principal Components Analysis

(2019) Irineo Cabreros et al.   GENETICS

Are populations like a circuit? Comparing isolation by resistance to a new coalescent‐based method

(2019) Erik Lundgren et al.   Molecular Ecology Resources

Genomic Patterns of Local Adaptation under Gene Flow in Arabidopsis lyrata

(2019) Tuomas Hämälä et al.   MOLECULAR BIOLOGY AND EVOLUTION

Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues

(2019) Mathias Wiegmann et al.   Scientific Reports

Mating system impacts the genetic architecture of adaptation to heterogeneous environments

(2019) Kathryn A. Hodgins et al.   NEW PHYTOLOGIST

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Contrasting genetic regulation of plant development in wild barley grown in two European environments revealed by nested association mapping

(2018) Paul Herzig et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

(2018) Brenna R. Forester et al.   MOLECULAR ECOLOGY

Evaluating methods to visualize patterns of genetic differentiation on a landscape

(2018) Geoffrey L. House et al.   Molecular Ecology Resources

Evaluation of redundancy analysis to identify signatures of local adaptation

(2018) Thibaut Capblancq et al.   Molecular Ecology Resources

Targeted resequencing reveals genomic signatures of barley domestication

(2018) Artem Pankin et al.   NEW PHYTOLOGIST

Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope

(2018) Xiaolei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ResistanceGA : An R package for the optimization of resistance surfaces using genetic algorithms

(2018) William E. Peterman   Methods in Ecology and Evolution

Inferring Continuous and Discrete Population Genetic Structure Across Space

(2018) Gideon S. Bradburd et al.   GENETICS

Risk-management strategies and transpiration rates of wild barley in uncertain environments

(2018) Eyal Galkin et al.   PHYSIOLOGIA PLANTARUM

A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots

(2018) Daniel J. Lawson et al.   Nature Communications

Genebank genomics highlights the diversity of a global barley collection

(2018) Sara G. Milner et al.   NATURE GENETICS

WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas

(2017) Stephen E. Fick et al.   INTERNATIONAL JOURNAL OF CLIMATOLOGY

Genomics of adaptive divergence with chromosome-scale heterogeneity in crossover rate

(2017) Daniel Berner et al.   MOLECULAR ECOLOGY

Gene flow and selection interact to promote adaptive divergence in regions of low recombination

(2017) Kieran Samuk et al.   MOLECULAR ECOLOGY

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

The Evolutionary Interplay between Adaptation and Self-Fertilization

(2017) Matthew Hartfield et al.   TRENDS IN GENETICS

SoilGrids250m: Global gridded soil information based on machine learning

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The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?

(2016) Yoshiaki Tsuda et al.   MOLECULAR ECOLOGY

The genetics of extreme microgeographic adaptation: an integrated approach identifies a major gene underlying leaf trichome divergence in YellowstoneMimulus guttatus

(2016) Margaret F. Hendrick et al.   MOLECULAR ECOLOGY

High-resolution mapping of global surface water and its long-term changes

(2016) Jean-François Pekel et al.   NATURE

Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

(2016) Joanne Russell et al.   NATURE GENETICS

RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum

(2015) Sariel Hübner et al.   BMC PLANT BIOLOGY

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

A practical guide to environmental association analysis in landscape genomics

(2015) Christian Rellstab et al.   MOLECULAR ECOLOGY

Detecting spatial genetic signatures of local adaptation in heterogeneous landscapes

(2015) Brenna R. Forester et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Visualizing spatial population structure with estimated effective migration surfaces

(2015) Desislava Petkova et al.   NATURE GENETICS

Barley: a translational model for adaptation to climate change

(2015) Ian K. Dawson et al.   NEW PHYTOLOGIST

Genome-environment associations in sorghum landraces predict adaptive traits

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SNP2GO: Functional Analysis of Genome-Wide Association Studies

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Evolutionary History of Wild Barley (Hordeum vulgare subsp. spontaneum) Analyzed Using Multilocus Sequence Data and Paleodistribution Modeling

(2014) Sabine S. Jakob et al.   Genome Biology and Evolution

DNA sequence variation of wild barley Hordeum spontaneum (L.) across environmental gradients in Israel

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Genome scan methods against more complex models: when and how much should we trust them?

(2014) Pierre de Villemereuil et al.   MOLECULAR ECOLOGY

The low-recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression

(2014) Katie Baker et al.   PLANT JOURNAL

Advances and limits of using population genetics to understand local adaptation

(2014) Peter Tiffin et al.   TRENDS IN ECOLOGY & EVOLUTION

Two Genomic Regions Contribute Disproportionately to Geographic Differentiation in Wild Barley

(2014) Zhou Fang et al.   G3-Genes Genomes Genetics

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Complex Patterns of Local Adaptation in Teosinte

(2013) Tanja Pyhäjärvi et al.   Genome Biology and Evolution

Estimating and interpreting FST: The impact of rare variants

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The consequences of gene flow for local adaptation and differentiation: a two-locus two-deme model

(2013) Ada Akerman et al.   JOURNAL OF MATHEMATICAL BIOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Phenotypic landscapes: phenological patterns in wild and cultivated barley

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Islands and streams: clusters and gene flow in wild barley populations from the Levant

(2012) SARIEL HÜBNER et al.   MOLECULAR ECOLOGY

Characterizing genomic variation ofArabidopsis thaliana: the roles of geography and climate

(2012) JESSE R. LASKY et al.   MOLECULAR ECOLOGY

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Quantifying effects of environmental and geographical factors on patterns of genetic differentiation

(2011) CHENG-RUEI LEE et al.   MOLECULAR ECOLOGY

Adaptive genetic differentiation in a predominantly self-pollinating species analyzed by transplanting into natural environment, crossbreeding and QST-FST test

(2011) S. Volis   NEW PHYTOLOGIST

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The effects of linkage and gene flow on local adaptation: A two-locus continent–island model

(2011) Reinhard Bürger et al.   THEORETICAL POPULATION BIOLOGY

Asymptotic Conditional Singular Value Decomposition for High-Dimensional Genomic Data

(2010) Jeffrey T. Leek   BIOMETRICS

Fine-scale spatial genetic structure in a predominantly selfing plant: role of seed and pollen dispersal

(2009) S Volis et al.   HEREDITY

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Strong correlation of wild barley (Hordeum spontaneum) population structure with temperature and precipitation variation

(2009) S. HÜBNER et al.   MOLECULAR ECOLOGY

A Genealogical Interpretation of Principal Components Analysis

(2009) Gil McVean   PLoS Genetics