Targeted resequencing reveals genomic signatures of barley domestication

Signatures of soft sweeps across the Dt1 locus underlying determinate growth habit in soya bean [Glycine max (L.) Merr.]

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A chromosome conformation capture ordered sequence of the barley genome

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A novel mutation conferring the nonbrittle phenotype of cultivated barley

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Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

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Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

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The Impact of Domestication on the Circadian Clock

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Evolution of the Grain Dispersal System in Barley

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Patterns of genomic changes with crop domestication and breeding

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Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

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Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

(2015) Zhengkui Zhou et al.   NATURE BIOTECHNOLOGY

Domestication selected for deceleration of the circadian clock in cultivated tomato

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Barley: a translational model for adaptation to climate change

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CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1

(2015) Ling Zhu et al.   Nature Communications

Second-generation PLINK: rising to the challenge of larger and richer datasets

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Rice domestication occurred through single origin and multiple introgressions

(2015) Xuehui Huang et al.   Nature Plants

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

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A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Plant domestication versus crop evolution: a conceptual framework for cereals and grain legumes

(2014) Shahal Abbo et al.   TRENDS IN PLANT SCIENCE

Two Genomic Regions Contribute Disproportionately to Geographic Differentiation in Wild Barley

(2014) Zhou Fang et al.   G3-Genes Genomes Genetics

Resequencing Data Indicate a Modest Effect of Domestication on Diversity in Barley: A Cultigen With Multiple Origins

(2013) Peter L. Morrell et al.   JOURNAL OF HEREDITY

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

Barley whole exome capture: a tool for genomic research in the genusHordeumand beyond

(2013) Martin Mascher et al.   PLANT JOURNAL

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

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Reticulated Origin of Domesticated Emmer Wheat Supports a Dynamic Model for the Emergence of Agriculture in the Fertile Crescent

(2013) Peter Civáň et al.   PLoS One

Emergence of Agriculture in the Foothills of the Zagros Mountains of Iran

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The Genomic Signature of Crop-Wild Introgression in Maize

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

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A critical review of the protracted domestication model for Near-Eastern founder crops: linear regression, long-distance gene flow, archaeological, and archaeobotanical evidence

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A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Comparative population genomics of maize domestication and improvement

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Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley

(2012) S. Zakhrabekova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tibet is one of the centers of domestication of cultivated barley

(2012) F. Dai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons

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Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

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Pathways to Asian Civilizations: Tracing the Origins and Spread of Rice and Rice Cultures

(2012) Dorian Q. Fuller   Rice

The variant call format and VCFtools

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Early agricultural pathways: moving outside the ‘core area’ hypothesis in Southwest Asia

(2011) Dorian Q. Fuller et al.   JOURNAL OF EXPERIMENTAL BOTANY

EDL3 is an F-box protein involved in the regulation of abscisic acid signalling in Arabidopsis thaliana

(2011) Petra Koops et al.   JOURNAL OF EXPERIMENTAL BOTANY

Distinguishing wild and domestic wheat and barley spikelets from early Holocene sites in the Near East

(2011) Ken-ichi Tanno et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Plant use in three Pre-Pottery Neolithic sites of the northern and eastern Fertile Crescent: a preliminary report

(2011) Simone Riehl et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Cultivation as slow evolutionary entanglement: comparative data on rate and sequence of domestication

(2011) Dorian Q. Fuller et al.   VEGETATION HISTORY AND ARCHAEOBOTANY

Agricultural Origins: Centers and Noncenters; A Near Eastern Reappraisal

(2010) Shahal Abbo et al.   CRITICAL REVIEWS IN PLANT SCIENCES

ARCHAEOLOGICAL DATA REVEAL SLOW RATES OF EVOLUTION DURING PLANT DOMESTICATION

(2010) Michael D. Purugganan et al.   EVOLUTION

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

(2010) Janet A. Higgins et al.   PLoS One

Patterns of phenotypic diversity in an Ethiopian barley collection, and the Arussi-Bale Highland as a center of origin of barley

(2008) MULUGETA NEGASSA   HEREDITAS

Biochemical Characterization of Arabidopsis Complexes Containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA Proteins in Light Control of Plant Development

(2008) D. Zhu et al.   PLANT CELL

The genetic expectations of a protracted model for the origins of domesticated crops

(2008) R. G. Allaby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA