Convergent losses of SCPP genes and ganoid scales among non-teleost actinopterygians

Coevolution of enamel, ganoin, enameloid, and their matrix SCPP genes in osteichthyans

(2021) Kazuhiko Kawasaki et al.   iScience

Tracing the genetic footprints of vertebrate landing in non-teleost ray-finned fishes

(2021) Xupeng Bi et al.   CELL

Towards complete and error-free genome assemblies of all vertebrate species

(2021) Arang Rhie et al.   NATURE

The bowfin genome illuminates the developmental evolution of ray-finned fishes

(2021) Andrew W. Thompson et al.   NATURE GENETICS

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

(2020) Kang Du et al.   Nature Ecology & Evolution

Insights into the Evolution of Neoteny from the Genome of the Asian Icefish Protosalanx chinensis

(2020) Jie Zhang et al.   iScience

Comparative transcriptome analysis of scaled and scaleless skins in Gymnocypris eckloni provides insights into the molecular mechanism of scale degeneration

(2020) Xiu Feng et al.   BMC GENOMICS

The American Paddlefish Genome Provides Novel Insights into Chromosomal Evolution and Bone Mineralization in Early Vertebrates

(2020) Peilin Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data

(2018) Lily C. Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Genomic Survey of SCPP Family Genes in Fishes Provides Novel Insights into the Evolution of Fish Scales

(2017) Yunyun Lv et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

SCPP Genes and Their Relatives in Gar: Rapid Expansion of Mineralization Genes in Osteichthyans

(2017) Kazuhiko Kawasaki et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Development of the skull and pectoral girdle in Siberian sturgeon,Acipenser baerii, and Russian sturgeon,Acipenser gueldenstaedtii(Acipenseriformes: Acipenseridae)

(2017) Peter Warth et al.   JOURNAL OF MORPHOLOGY

Phylotranscriptomic consolidation of the jawed vertebrate timetree

(2017) Iker Irisarri et al.   Nature Ecology & Evolution

Interactions of AMTN, ODAM and SCPPPQ1 proteins of a specialized basal lamina that attaches epithelial cells to tooth mineral

(2017) Aurélien Fouillen et al.   Scientific Reports

Scales, Enamel, Cosmine, Ganoine, and Early Osteichthyans

(2016) Hans-Peter Schultze   COMPTES RENDUS PALEVOL

The seahorse genome and the evolution of its specialized morphology

(2016) Qiang Lin et al.   NATURE

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

(2016) Ingo Braasch et al.   NATURE GENETICS

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate

(2016) Hailin Pan et al.   GigaScience

New genomic and fossil data illuminate the origin of enamel

(2015) Qingming Qu et al.   NATURE

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Characterisation of secretory calcium-binding phosphoprotein-proline-glutamine-rich 1: a novel basal lamina component expressed at cell-tooth interfaces

(2014) Pierre Moffatt et al.   CELL AND TISSUE RESEARCH

Elephant shark genome provides unique insights into gnathostome evolution

(2014) Byrappa Venkatesh et al.   NATURE

Maturation and beyond: proteins in the developmental continuum from enamel epithelium to junctional epithelium

(2014) Bernhard Ganss et al.   Frontiers in Physiology

SCPP genes in the coelacanth: Tissue mineralization genes shared by sarcopterygians

(2013) Kazuhiko Kawasaki et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Expression of odontogenic ameloblast-associated and amelotin proteins in the junctional epithelium

(2013) Clarice Nishio et al.   PERIODONTOLOGY 2000

GSP-37, a novel goldfish scale matrix protein: identification, localization and functional analysis

(2012) Kousei Miyabe et al.   FARADAY DISCUSSIONS

An Independent Genome Duplication Inferred from Hox Paralogs in the American Paddlefish—A Representative Basal Ray-Finned Fish and Important Comparative Reference

(2012) Karen D. Crow et al.   Genome Biology and Evolution

Odontogenic ameloblast-associated and amelotin are novel basal lamina components

(2012) Juliana Dos Santos Neves et al.   HISTOCHEMISTRY AND CELL BIOLOGY

Diverse biological functions of the SPARC family of proteins

(2012) Amy D. Bradshaw   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

The Evolution of Milk Casein Genes from Tooth Genes before the Origin of Mammals

(2011) K. Kawasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The SCPP gene repertoire in bony vertebrates and graded differences in mineralized tissues

(2009) Kazuhiko Kawasaki   DEVELOPMENT GENES AND EVOLUTION

Origin and evolution of the integumentary skeleton in non-tetrapod vertebrates

(2009) Jean-Yves Sire et al.   JOURNAL OF ANATOMY