Analysis of developmental imprinting dynamics in primates using SNP-free methods to identify imprinting defects in cloned placenta

Loss of H3K27me3 imprinting in the Sfmbt2 miRNA cluster causes enlargement of cloned mouse placentas

(2020) Kimiko Inoue et al.   Nature Communications

Overcoming Intrinsic H3K27me3 Imprinting Barriers Improves Post-implantation Development after Somatic Cell Nuclear Transfer

(2020) Le-Yun Wang et al.   Cell Stem Cell

Maternal H3K27me3-dependent autosomal and X chromosome imprinting

(2020) Zhiyuan Chen et al.   NATURE REVIEWS GENETICS

Maternal-biased H3K27me3 correlates with paternal-specific gene expression in the human morula

(2019) Wenhao Zhang et al.   GENES & DEVELOPMENT

Genomic Imprinting and Physiological Processes in Mammals

(2019) Valter Tucci et al.   CELL

RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting

(2019) Bharati Jadhav et al.   BMC BIOLOGY

Resetting histone modifications during human parental-to-zygotic transition

(2019) Weikun Xia et al.   SCIENCE

Distinct Imprinting Signatures and Biased Differentiation of Human Androgenetic and Parthenogenetic Embryonic Stem Cells

(2019) Ido Sagi et al.   Cell Stem Cell

Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development

(2019) Lizhi Leng et al.   Cell Stem Cell

Allelic H3K27me3 to allelic DNA methylation switch maintains noncanonical imprinting in extraembryonic cells

(2019) Zhiyuan Chen et al.   Science Advances

Cloning of Macaque Monkeys by Somatic Cell Nuclear Transfer

(2018) Zhen Liu et al.   CELL

Loss of H3K27me3 Imprinting in Somatic Cell Nuclear Transfer Embryos Disrupts Post-Implantation Development

(2018) Shogo Matoba et al.   Cell Stem Cell

Maternal 5mCpG Imprints at the PARD6G-AS1 and GCSAML Differentially Methylated Regions Are Decoupled From Parent-of-Origin Expression Effects in Multiple Human Tissues

(2018) Graziela de Sá Machado Araújo et al.   Frontiers in Genetics

The roles of TNFAIP2 in cancers and infectious diseases

(2018) Lin Jia et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Insights into imprinting from parent-of-origin phased methylomes and transcriptomes

(2018) Florian Zink et al.   NATURE GENETICS

Maternal H3K27me3 controls DNA methylation-independent imprinting

(2017) Azusa Inoue et al.   NATURE

Single-cell DNA methylome sequencing of human preimplantation embryos

(2017) Ping Zhu et al.   NATURE GENETICS

An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites

(2017) Peter J Skene et al.   eLife

DNA Methylation Profiling of Uniparental Disomy Subjects Provides a Map of Parental Epigenetic Bias in the Human Genome

(2016) Ricky S. Joshi et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Allele-Specific Methylome and Transcriptome Analysis Reveals Widespread Imprinting in the Human Placenta

(2016) Hirotaka Hamada et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide methylation analysis of retrocopy-associated CpG islands and their genomic environment

(2016) Katrin Grothaus et al.   Epigenetics

Pervasive polymorphic imprinted methylation in the human placenta

(2016) Courtney W. Hanna et al.   GENOME RESEARCH

Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals

(2016) Hui Zheng et al.   MOLECULAR CELL

Placental expression of DNA methyltransferase 1 (DNMT1): Gender-specific relation with human placental growth

(2016) A. Mukhopadhyay et al.   PLACENTA

Epigenetic status of H19/IGF2 and SNRPN imprinted genes in aborted and successfully derived embryonic stem cell lines in non-human primates

(2016) Florence Wianny et al.   Stem Cell Research

Human Oocyte-Derived Methylation Differences Persist in the Placenta Revealing Widespread Transient Imprinting

(2016) Marta Sanchez-Delgado et al.   PLoS Genetics

SIAH ubiquitin ligases regulate breast cancer cell migration and invasion independent of the oxygen status

(2015) M Gordian Adam et al.   CELL CYCLE

Generation of macaques with sperm derived from juvenile monkey testicular xenografts

(2015) Zhen Liu et al.   CELL RESEARCH

Histone Demethylase Expression Enhances Human Somatic Cell Nuclear Transfer Efficiency and Promotes Derivation of Pluripotent Stem Cells

(2015) Young Gie Chung et al.   Cell Stem Cell

Germline and somatic imprinting in the nonhuman primate highlights species differences in oocyte methylation

(2015) Clara Y. Cheong et al.   GENOME RESEARCH

Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse

(2015) Tomas Babak et al.   NATURE GENETICS

Embryonic Development following Somatic Cell Nuclear Transfer Impeded by Persisting Histone Methylation

(2014) Shogo Matoba et al.   CELL

Genome-wide parent-of-origin DNA methylation analysis reveals the intricacies of human imprinting and suggests a germline methylation-independent mechanism of establishment

(2014) F. Court et al.   GENOME RESEARCH

The role of genomic imprinting in biology and disease: an expanding view

(2014) Jo Peters   NATURE REVIEWS GENETICS

Genomic Imprinting in Mammals

(2014) D. P. Barlow et al.   Cold Spring Harbor Perspectives in Biology

Golgi-associated RhoBTB3 targets Cyclin E for ubiquitylation and promotes cell cycle progression

(2013) Albert Lu et al.   JOURNAL OF CELL BIOLOGY

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

(2013) Simone Picelli et al.   NATURE METHODS

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The Available Time Window for Embryo Transfer in the Rhesus Monkey (Macaca mulatta)

(2012) YONGCHANG CHEN et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome

(2012) Wei Xie et al.   CELL

Generation of Genetically Modified Mice by Oocyte Injection of Androgenetic Haploid Embryonic Stem Cells

(2012) Hui Yang et al.   CELL

Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes

(2012) Charlotte Proudhon et al.   MOLECULAR CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging

(2012) Fumihito Miura et al.   NUCLEIC ACIDS RESEARCH

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos

(2011) Sébastien A Smallwood et al.   NATURE GENETICS

Derivation of Rhesus Monkey Parthenogenetic Embryonic Stem Cells and Its MicroRNA Signature

(2011) Qiang Wei et al.   PLoS One

Transgenic rhesus monkeys produced by gene transfer into early-cleavage–stage embryos using a simian immunodeficiency virus-based vector

(2010) Yuyu Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Generation of transgenic monkeys with human inherited genetic disease

(2009) Anthony W.S. Chan et al.   METHODS