Early life stress causes persistent impacts on the microbiome of Atlantic salmon

Opportunities for microbiome research to enhance farmed freshwater fish quality and production

(2021) Lara Parata et al.   Reviews in Aquaculture

Environmental plasticity and colonisation history in the Atlantic salmon microbiome: A translocation experiment

(2020) Tamsyn M. Uren Webster et al.   MOLECULAR ECOLOGY

The role of the gut microbiome in sustainable teleost aquaculture

(2020) William Bernard Perry et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cortisol-Related Signatures of Stress in the Fish Microbiome

(2020) Tamsyn M. Uren Webster et al.   Frontiers in Microbiology

Gut Microbiota and Energy Homeostasis in Fish

(2019) Robyn Lisa Butt et al.   Frontiers in Endocrinology

Transcriptomic response to aquaculture intensification in Nile tilapia

(2019) Deiene Rodriguez‐Barreto et al.   Evolutionary Applications

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Role of priority effects in the early-life assembly of the gut microbiota

(2018) Daniel Sprockett et al.   Nature Reviews Gastroenterology & Hepatology

Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar ) reveals stage-specific microbial signatures

(2018) Jep Lokesh et al.   MicrobiologyOpen

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing density

(2018) Amy R Ellison et al.   BMC GENOMICS

Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon

(2018) Tamsyn M. Uren Webster et al.   Epigenetics

Do bacteria shape our development? Crosstalk between intestinal microbiota and HPA axis

(2017) Carolina de Weerth   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

New Paradigms to Help Solve the Global Aquaculture Disease Crisis

(2017) Grant D. Stentiford et al.   PLoS Pathogens

Under Pressure: Interactions between Commensal Microbiota and the Teleost Immune System

(2017) Cecelia Kelly et al.   Frontiers in Immunology

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Impacts of Early Life Stress on the Methylome and Transcriptome of Atlantic Salmon

(2017) Hooman K. Moghadam et al.   Scientific Reports

Stress and the microbiome: linking glucocorticoids to bacterial community dynamics in wild red squirrels

(2016) Mason R. Stothart et al.   Biology Letters

Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta)

(2016) Laetitia G. E. Wilkins et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Abrupt suspension of probiotics administration may increase host pathogen susceptibility by inducing gut dysbiosis

(2016) Zhi Liu et al.   Scientific Reports

Using Corticosteroids to Reshape the Gut Microbiome

(2015) Edmond Y. Huang et al.   INFLAMMATORY BOWEL DISEASES

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Maternal prenatal stress is associated with the infant intestinal microbiota

(2015) Maartje A.C. Zijlmans et al.   PSYCHONEUROENDOCRINOLOGY

The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type

(2014) H.-C. Ingerslev et al.   AQUACULTURE

Pseudomonas Aeruginosa Elastase Disrupts the Cortisol-Binding Activity of Corticosteroid-Binding Globulin

(2014) Marc Simard et al.   ENDOCRINOLOGY

Deciphering microbial landscapes of fish eggs to mitigate emerging diseases

(2014) Yiying Liu et al.   ISME Journal

The Colonization Dynamics of the Gut Microbiota in Tilapia Larvae

(2014) Christos Giatsis et al.   PLoS One

Microbial fingerprinting detects intestinal microbiota dysbiosis in Zebrafish models with chemically-induced enterocolitis

(2013) Qi He et al.   BMC MICROBIOLOGY

Hatchery tank enrichment affects cortisol levels and shelter-seeking in Atlantic salmon (Salmo salar)

(2013) Joacim Näslund et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Aeromonasspp. whole genomes and virulence factors implicated in fish disease

(2013) R Beaz-Hidalgo et al.   JOURNAL OF FISH DISEASES

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure

(2012) J. L. VandeWalle et al.   ENVIRONMENTAL MICROBIOLOGY

Levels of domestication in fish: implications for the sustainable future of aquaculture

(2012) Fabrice Teletchea et al.   FISH AND FISHERIES

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

No evidence of Bartonella quintana but detection of Acinetobacter baumannii in head lice from elementary schoolchildren in Paris

(2011) Sophie Bouvresse et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

The Ecology, Biology and Pathogenesis of Acinetobacter spp.: An Overview

(2011) Hamuel James Doughari et al.   MICROBES AND ENVIRONMENTS

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection

(2010) J. M. Janda et al.   CLINICAL MICROBIOLOGY REVIEWS