Prediction of drug–disease associations by integrating common topologies of heterogeneous networks and specific topologies of subnets

Biomedical data and computational models for drug repositioning: a comprehensive review

(2020) Huimin Luo et al.   BRIEFINGS IN BIOINFORMATICS

Identification of Drug-Disease Associations Using Information of Molecular Structures and Clinical Symptoms via Deep Convolutional Neural Network

(2020) Zhanchao Li et al.   Frontiers in Chemistry

Drug repositioning by prediction of drug’s anatomical therapeutic chemical code via network-based inference approaches

(2020) Yayuan Peng et al.   BRIEFINGS IN BIOINFORMATICS

Attentional multi-level representation encoding based on convolutional and variance autoencoders for lncRNA–disease association prediction

(2020) Nan Sheng et al.   BRIEFINGS IN BIOINFORMATICS

Predicting drug–disease associations through layer attention graph convolutional network

(2020) Zhouxin Yu et al.   BRIEFINGS IN BIOINFORMATICS

Comparative Toxicogenomics Database (CTD): update 2021

(2020) Allan Peter Davis et al.   NUCLEIC ACIDS RESEARCH

Graph Convolutional Autoencoder and Fully-Connected Autoencoder with Attention Mechanism Based Method for Predicting Drug-Disease Associations

(2020) Ping Xuan et al.   IEEE Journal of Biomedical and Health Informatics

Drug repositioning screening identifies etravirine as a potential therapeutic for friedreich's ataxia

(2019) Giulia Alfedi et al.   MOVEMENT DISORDERS

Drug repositioning through integration of prior knowledge and projections of drugs and diseases

(2019) Ping Xuan et al.   BIOINFORMATICS

Inferring Drug-Related Diseases Based on Convolutional Neural Network and Gated Recurrent Unit

(2019) Ping Xuan et al.   MOLECULES

Convolutional Neural Network and Bidirectional Long Short-Term Memory-Based Method for Predicting Drug–Disease Associations

(2019) Xuan et al.   Cells

Predicting drug−disease associations via sigmoid kernel-based convolutional neural networks

(2019) Han-Jing Jiang et al.   Journal of Translational Medicine

HeteroDualNet: A Dual Convolutional Neural Network With Heterogeneous Layers for Drug-Disease Association Prediction via Chou’s Five-Step Rule

(2019) Ping Xuan et al.   Frontiers in Pharmacology

Computational drug repositioning using low-rank matrix approximation and randomized algorithms

(2018) Huimin Luo et al.   BIOINFORMATICS

Predicting drug-disease associations by using similarity constrained matrix factorization

(2018) Wen Zhang et al.   BMC BIOINFORMATICS

Computational Drug Repurposing: Current Trends

(2018) Berin Karaman et al.   CURRENT MEDICINAL CHEMISTRY

Computational drug repositioning with random walk on a heterogeneous network

(2018) Huimin Luo et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Prediction of Novel Drugs for Hepatocellular Carcinoma Based on Multi-Source Random Walk

(2017) Liang Yu et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

Enhancing the Promise of Drug Repositioning through Genetics

(2017) Jayne-Louise E. Pritchard et al.   Frontiers in Pharmacology

Drug repositioning based on comprehensive similarity measures and Bi-Random walk algorithm

(2016) Huimin Luo et al.   BIOINFORMATICS

NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning

(2016) Xing Chen et al.   PLoS Computational Biology

PubChem Substance and Compound databases

(2015) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

Drug repositioning by integrating target information through a heterogeneous network model

(2014) Wenhui Wang et al.   BIOINFORMATICS

Drug–Disease Association and Drug-Repositioning Predictions in Complex Diseases Using Causal Inference–Probabilistic Matrix Factorization

(2014) Jihong Yang et al.   Journal of Chemical Information and Modeling

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

Similarity-based machine learning methods for predicting drug–target interactions: a brief review

(2013) Hao Ding et al.   BRIEFINGS IN BIOINFORMATICS

Combining Drug and Gene Similarity Measures for Drug-Target Elucidation

(2011) Liat Perlman et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Drug repositioning: Re-investigating existing drugs for new therapeutic indications

(2011) BM Padhy et al.   Journal of Postgraduate Medicine

PREDICT: a method for inferring novel drug indications with application to personalized medicine

(2011) A. Gottlieb et al.   Molecular Systems Biology

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS