An effective drug-disease associations prediction model based on graphic representation learning over multi-biomolecular network

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

MIPDH: A Novel Computational Model for Predicting microRNA–mRNA Interactions by DeepWalk on a Heterogeneous Network

(2020) Leon Wong et al.   ACS Omega

Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network

(2020) Hai-Cheng Yi et al.   iScience

Predicting drug–disease associations through layer attention graph convolutional network

(2020) Zhouxin Yu et al.   BRIEFINGS IN BIOINFORMATICS

An Improved Deep Forest Model for Predicting Self-Interacting Proteins From Protein Sequence Using Wavelet Transformation

(2019) Zhan-Heng Chen et al.   Frontiers in Genetics

LMTRDA: Using logistic model tree to predict MiRNA-disease associations by fusing multi-source information of sequences and similarities

(2019) Lei Wang et al.   PLoS Computational Biology

Identification of a serum-based miRNA signature for response of esophageal squamous cell carcinoma to neoadjuvant chemotherapy

(2019) Yukiko Niwa et al.   Journal of Translational Medicine

Prediction of Self-Interacting Proteins from Protein Sequence Information Based on Random Projection Model and Fast Fourier Transform

(2019) Zhan-Heng Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Drug repositioning based on bounded nuclear norm regularization

(2019) Mengyun Yang et al.   BIOINFORMATICS

An Ensemble Classifier to Predict Protein–Protein Interactions by Combining PSSM-based Evolutionary Information with Local Binary Pattern Model

(2019) Yang Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DBMDA: A Unified Embedding for Sequence-Based miRNA Similarity Measure with Applications to Predict and Validate miRNA-Disease Associations

(2019) Kai Zheng et al.   Molecular Therapy-Nucleic Acids

Evaluation and comparison of bioinformatic tools for the enrichment analysis of metabolomics data

(2018) Anna Marco-Ramell et al.   BMC BIOINFORMATICS

Predicting drug-disease associations by using similarity constrained matrix factorization

(2018) Wen Zhang et al.   BMC BIOINFORMATICS

Discovering Fuzzy Structural Patterns for Graph Analytics

(2018) Tiantian He et al.   IEEE TRANSACTIONS ON FUZZY SYSTEMS

A Deep Learning Framework for Robust and Accurate Prediction of ncRNA-Protein Interactions Using Evolutionary Information

(2018) Hai-Cheng Yi et al.   Molecular Therapy-Nucleic Acids

Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph

(2018) Zhi-An Huang et al.   BMC Medical Genomics

lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs

(2017) Ya-Ru Miao et al.   NUCLEIC ACIDS RESEARCH

miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions

(2017) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

In silico prediction of drug-target interaction networks based on drug chemical structure and protein sequences

(2017) Zhengwei Li et al.   Scientific Reports

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

(2016) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Detection of Interactions between Proteins through Rotation Forest and Local Phase Quantization Descriptors

(2015) Leon Wong et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA

(2015) Xing Chen   Scientific Reports

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression

(2014) Qinghua Jiang et al.   NUCLEIC ACIDS RESEARCH

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug

(2012) Hee Lee et al.   BMC Systems Biology

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS