Molecular dynamics simulations of the effects of lipid oxidation on the permeability of cell membranes
出版年份 2021 全文链接
标题
Molecular dynamics simulations of the effects of lipid oxidation on the permeability of cell membranes
作者
关键词
Electroporation, Secondary oxidation products, Radical oxygen species, Free energy calculations, Lipid bilayers, Conductance
出版物
BIOELECTROCHEMISTRY
Volume 141, Issue -, Pages 107869
出版商
Elsevier BV
发表日期
2021-06-05
DOI
10.1016/j.bioelechem.2021.107869
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Machine Learning in QM/MM Molecular Dynamics Simulations of Condensed-Phase Systems
- (2021) Lennard Böselt et al. Journal of Chemical Theory and Computation
- Calcium Delivery by Electroporation Induces In Vitro Cell Death through Mitochondrial Dysfunction without DNA Damages
- (2020) Laure Gibot et al. Cancers
- Probing Nanoelectroporation and Resealing of the Cell Membrane by the Entry of Ca2+ and Ba2+ Ions
- (2020) Wenfei Bo et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- New insights on the role of ROS in the mechanisms of sonoporation-mediated gene delivery
- (2020) Jean-Michel Escoffre et al. ULTRASONICS SONOCHEMISTRY
- Ferroptosis occurs through an osmotic mechanism and propagates independently of cell rupture
- (2020) Michelle Riegman et al. NATURE CELL BIOLOGY
- Igniting the spread of ferroptotic cell death
- (2020) Andrew J. Davidson et al. NATURE CELL BIOLOGY
- Deep-neural-network solution of the electronic Schrödinger equation
- (2020) Jan Hermann et al. Nature Chemistry
- Non-invasive gene electrotransfer in skin
- (2019) lise Pasquet et al. Human Gene Therapy Methods
- Membrane Electroporation and Electropermeabilization: Mechanisms and Models
- (2019) Tadej Kotnik et al. Annual Review of Biophysics
- Mass Spectrometric Study of Acoustically Levitated Droplets Illuminates Molecular-Level Mechanism of Photodynamic Therapy for Cancer involving Lipid Oxidation
- (2019) Chaonan Mu et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Understanding membrane remodelling initiated by photosensitized lipid oxidation
- (2019) Tayana Mazin Tsubone et al. BIOPHYSICAL CHEMISTRY
- Development of voltage gated transdermal drug delivery platform to impose synergistic enhancement in skin permeation using electroporation and gold nanoparticle
- (2019) T.S. Anirudhan et al. Materials Science & Engineering C-Materials for Biological Applications
- Unifying machine learning and quantum chemistry with a deep neural network for molecular wavefunctions
- (2019) K. T. Schütt et al. Nature Communications
- A Comprehensive Review on Lipid Oxidation in Meat and Meat Products
- (2019) Rubén Domínguez et al. Antioxidants
- Mechanisms of Photosensitized Lipid Oxidation and Membrane Permeabilization
- (2019) Isabel O. L. Bacellar et al. ACS Omega
- Electropermeabilization does not correlate with plasma membrane lipid oxidation
- (2019) Olga Michel et al. BIOELECTROCHEMISTRY
- Investigation of the chemical mechanisms involved in the electropulsation of membranes at the molecular level
- (2018) Marie Breton et al. BIOELECTROCHEMISTRY
- Accurate Binding of Sodium and Calcium to a POPC Bilayer by Effective Inclusion of Electronic Polarization
- (2018) Josef Melcr et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Effects of hydration on the protonation state of a lysine analog crossing a phospholipid bilayer – insights from molecular dynamics and free-energy calculations
- (2018) Daniel Bonhenry et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Atomic scale understanding of the permeation of plasma species across native and oxidized membranes
- (2018) Jamoliddin Razzokov et al. JOURNAL OF PHYSICS D-APPLIED PHYSICS
- Crashing the computer: apoptosis vs. necroptosis in neuroinflammation
- (2018) Bradlee L. Heckmann et al. CELL DEATH AND DIFFERENTIATION
- The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study
- (2018) Lea Rems et al. BIOELECTROCHEMISTRY
- Lipid Peroxidation: Kinetics, Mechanisms, and Products
- (2017) Zosia A. M. Zielinski et al. JOURNAL OF ORGANIC CHEMISTRY
- Effect of head group and lipid tail oxidation in the cell membrane revealed through integrated simulations and experiments
- (2017) M. Yusupov et al. Scientific Reports
- Electropermeabilization of Inner and Outer Cell Membranes with Microsecond Pulsed Electric Fields: Quantitative Study with Calcium Ions
- (2017) Hanna Hanna et al. Scientific Reports
- A molecular insight into the electro-transfer of small molecules through electropores driven by electric fields
- (2016) Maura Casciola et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Ferroptosis: process and function
- (2016) Y Xie et al. CELL DEATH AND DIFFERENTIATION
- Preferential hydrolysis of truncated oxidized glycerophospholipids by lysosomal phospholipase A2
- (2016) Akira Abe et al. JOURNAL OF LIPID RESEARCH
- Peroxidation of polyunsaturated fatty acids by lipoxygenases drives ferroptosis
- (2016) Wan Seok Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effect of lipid peroxidation on membrane permeability of cancer and normal cells subjected to oxidative stress
- (2016) Jonas Van der Paal et al. Chemical Science
- Rapid and Sensitive Determination of Lipid Oxidation Using the Reagent Kit Based on Spectrophotometry (FOODLABfatSystem)
- (2016) Chang Woo Kwon et al. Journal of Chemistry
- Critical role of peroxiredoxin 6 in the repair of peroxidized cell membranes following oxidative stress
- (2015) Haitao Li et al. FREE RADICAL BIOLOGY AND MEDICINE
- Optimization of the Electroformation of Giant Unilamellar Vesicles (GUVs) with Unsaturated Phospholipids
- (2015) Marie Breton et al. JOURNAL OF MEMBRANE BIOLOGY
- Bilayer Deformation, Pores, and Micellation Induced by Oxidized Lipids
- (2015) Phansiri Boonnoy et al. Journal of Physical Chemistry Letters
- Photodynamic Therapy: Current Status and Future Directions
- (2015) Ludmil Benov MEDICAL PRINCIPLES AND PRACTICE
- Low levels of lipid oxidation radically increase the passive permeability of lipid bilayers
- (2015) Kristina A. Runas et al. Soft Matter
- The Structural Role of Cholesterol in Cell Membranes: From Condensed Bilayers to Lipid Rafts
- (2014) Martin R. Krause et al. ACCOUNTS OF CHEMICAL RESEARCH
- Electroporation-Based Technologies for Medicine: Principles, Applications, and Challenges
- (2014) Martin L. Yarmush et al. Annual Review of Biomedical Engineering
- The dynamics of giant unilamellar vesicle oxidation probed by morphological transitions
- (2014) Shalene Sankhagowit et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Ion-Induced Defect Permeation of Lipid Membranes
- (2014) Igor Vorobyov et al. BIOPHYSICAL JOURNAL
- Atomistic Simulations of Pore Formation and Closure in Lipid Bilayers
- (2014) W. F. Drew Bennett et al. BIOPHYSICAL JOURNAL
- The Action of Peroxyl Radicals, Powerful Deleterious Reagents, Explains Why Neither Cholesterol Nor Saturated Fatty Acids Cause Atherogenesis and Age-Related Diseases
- (2014) Gerhard Spiteller et al. CHEMISTRY-A EUROPEAN JOURNAL
- Free Energy Reconstruction from Metadynamics or Adiabatic Free Energy Dynamics Simulations
- (2014) Michel A. Cuendet et al. Journal of Chemical Theory and Computation
- Lipid Peroxidation in Membranes: The Peroxyl Radical Does Not “Float”
- (2014) Julian Garrec et al. Journal of Physical Chemistry Letters
- Nanosecond pulsed electric field stimulation of reactive oxygen species in human pancreatic cancer cells is Ca2+-dependent
- (2013) Richard Nuccitelli et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Reactive oxygen species at phospholipid bilayers: Distribution, mobility and permeation
- (2013) Rodrigo M. Cordeiro BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Bactericidal Antibiotics Induce Mitochondrial Dysfunction and Oxidative Damage in Mammalian Cells
- (2013) S. Kalghatgi et al. Science Translational Medicine
- Lipid oxidation induces structural changes in biomimetic membranes
- (2013) Georges Weber et al. Soft Matter
- Oxidative effects of nanosecond pulsed electric field exposure in cells and cell-free media
- (2012) Olga N. Pakhomova et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Nanosecond pulsed electric fields (nsPEFs) activate intrinsic caspase-dependent and caspase-independent cell death in Jurkat cells
- (2012) Wei Ren et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Biophysics of lipid bilayers containing oxidatively modified phospholipids: Insights from fluorescence and EPR experiments and from MD simulations
- (2012) Piotr Jurkiewicz et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Chemistry of phospholipid oxidation
- (2012) Ana Reis et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Heating and flooding: A unified approach for rapid generation of free energy surfaces
- (2012) Ming Chen et al. JOURNAL OF CHEMICAL PHYSICS
- Effect of electroporation on viability and bioconversion of isoflavones in mannitol-soymilk fermented by lactobacilli and bifidobacteria
- (2012) Siok-Koon Yeo et al. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
- Plasma membrane permeabilization by trains of ultrashort electric pulses
- (2010) Bennett L. Ibey et al. BIOELECTROCHEMISTRY
- The current-voltage relation for electropores with conductivity gradients
- (2010) Jianbo Li et al. Biomicrofluidics
- Life Cycle of an Electropore: Field-Dependent and Field-Independent Steps in Pore Creation and Annihilation
- (2010) Zachary A. Levine et al. JOURNAL OF MEMBRANE BIOLOGY
- Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types
- (2010) Jeffery B. Klauda et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Oxidation Changes Physical Properties of Phospholipid Bilayers: Fluorescence Spectroscopy and Molecular Simulations
- (2010) Lenka Beranova et al. LANGMUIR
- Lipid nanopores can form a stable, ion channel-like conduction pathway in cell membrane
- (2009) Andrei G. Pakhomov et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Giant Vesicles under Oxidative Stress Induced by a Membrane-Anchored Photosensitizer
- (2009) Karin A. Riske et al. BIOPHYSICAL JOURNAL
- PLUMED: A portable plugin for free-energy calculations with molecular dynamics
- (2009) Massimiliano Bonomi et al. COMPUTER PHYSICS COMMUNICATIONS
- Lateral Diffusion of Membrane Proteins
- (2009) Sivaramakrishnan Ramadurai et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Electroporating Fields Target Oxidatively Damaged Areas in the Cell Membrane
- (2009) P. Thomas Vernier et al. PLoS One
- Plasma membrane permeabilization by 60- and 600-ns electric pulses is determined by the absorbed dose
- (2008) Bennett L. Ibey et al. BIOELECTROMAGNETICS
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Protein area occupancy at the center of the red blood cell membrane
- (2008) A. D. Dupuy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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