Genome-wide SNP data suggest complex ancestry of sympatric North Pacific killer whale ecotypes

Admixture, Population Structure, and F-Statistics

(2016) B. M. Peter   GENETICS

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

(2016) Andrew D. Foote et al.   Nature Communications

Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation

(2015) Christopher H. Martin et al.   EVOLUTION

Sympatric speciation in killer whales?

(2015) A D Foote et al.   HEREDITY

Resource specialisation and the divergence of killer whale populations

(2015) A R Hoelzel et al.   HEREDITY

Long-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia

(2015) Isabel Alves et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hybrid ‘superswarm’ leads to rapid divergence and establishment of populations during a biological invasion

(2015) Denis Roy et al.   MOLECULAR ECOLOGY

Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistesspp.) - phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation

(2015) Martin Stervander et al.   MOLECULAR ECOLOGY

Geographic and temporal dynamics of a global radiation and diversification in the killer whale

(2015) Phillip A. Morin et al.   MOLECULAR ECOLOGY

Convergent evolution of the genomes of marine mammals

(2015) Andrew D Foote et al.   NATURE GENETICS

Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake

(2015) M. Malinsky et al.   SCIENCE

PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

(2015) Nicola De Maio et al.   SYSTEMATIC BIOLOGY

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Phylogenomics of the killer whale indicates ecotype divergence in sympatry

(2014) A E Moura et al.   HEREDITY

Bears in a Forest of Gene Trees: Phylogenetic Inference Is Complicated by Incomplete Lineage Sorting and Gene Flow

(2014) Verena E. Kutschera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift

(2014) Andre E. Moura et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Toward a new history and geography of human genes informed by ancient DNA

(2014) Joseph K. Pickrell et al.   TRENDS IN GENETICS

Geographic Patterns of Genetic Differentiation among Killer Whales in the Northern North Pacific

(2013) Kim M. Parsons et al.   JOURNAL OF HEREDITY

Ignoring Heterozygous Sites Biases Phylogenomic Estimates of Divergence Times: Implications for the Evolutionary History of Microtus Voles

(2013) Heidi E.L. Lischer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Constructing Phylogenies in the Presence Of Intra-Individual Site Polymorphisms (2ISPs) with a Focus on the Nuclear Ribosomal Cistron

(2013) Alastair J. Potts et al.   SYSTEMATIC BIOLOGY

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

(2013) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Inferred Paternity and Male Reproductive Success in a Killer Whale (Orcinus orca) Population

(2011) Michael J. Ford et al.   JOURNAL OF HEREDITY

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Out of the Pacific and Back Again: Insights into the Matrilineal History of Pacific Killer Whale Ecotypes

(2011) Andrew D. Foote et al.   PLoS One

What do we need to know about speciation?

(2011)   TRENDS IN ECOLOGY & EVOLUTION

Shark predation and tooth wear in a population of northeastern Pacific killer whales

(2010) JKB Ford et al.   Aquatic Biology

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca)

(2009) M. PILOT et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

(2009) ANDREW D. FOOTE et al.   MOLECULAR ECOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Eastern temperate North Pacific offshore killer whales (Orcinus orca): Occurrence, movements, and insights into feeding ecology

(2008) Marilyn E. Dahlheim et al.   MARINE MAMMAL SCIENCE

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One