Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

(2015) Hernán E. Morales et al.   MOLECULAR ECOLOGY

Using genomics to characterize evolutionary potential for conservation of wild populations

(2014) Katherine A. Harrisson et al.   Evolutionary Applications

Mitogenomic phylogeny of the Percichthyidae and Centrarchiformes (Percomorphaceae): comparison with recent nuclear gene-based studies and simultaneous analysis

(2014) Sébastien Lavoué et al.   GENE

Signatures of natural selection in the mitochondrial genomes of Tachycineta swallows and their implications for latitudinal patterns of the ‘pace of life’

(2014) Maria Stager et al.   GENE

The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

(2014) José Melo-Ferreira et al.   Genome Biology and Evolution

Review and meta-analysis of natural selection in mitochondrial complex I in metazoans

(2014) Michael R. Garvin et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Thermal adaptation and clinal mitochondrial DNA variation of European anchovy

(2014) G. Silva et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mitochondrial–Nuclear Interactions: Compensatory Evolution or Variable Functional Constraint among Vertebrate Oxidative Phosphorylation Genes?

(2013) Feifei Zhang et al.   Genome Biology and Evolution

FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection

(2013) B. Murrell et al.   MOLECULAR BIOLOGY AND EVOLUTION

MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

(2013) W. Iwasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thermal adaptation and acclimation of ectotherms from differing aquatic climates

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Adaptive Genetic Variation on the Landscape: Methods and Cases

(2012) Sean D. Schoville et al.   Annual Review of Ecology Evolution and Systematics

Genetics of Climate Change Adaptation

(2012) Steven J. Franks et al.   Annual Review of Genetics

Accumulation of slightly deleterious mutations in the mitochondrial genome: A hallmark of animal domestication

(2012) Austin L. Hughes   GENE

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sequence verification of synthetic DNA by assembly of sequencing reads

(2012) Mandy L. Wilson et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

(2011) Margaret Byrne et al.   JOURNAL OF BIOGEOGRAPHY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

Phylogenetics and revised taxonomy of the Australian freshwater cod genus,Maccullochella(Percichthyidae)

(2010) Catherine J. Nock et al.   MARINE AND FRESHWATER RESEARCH

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Geological Dates and Molecular Rates: Fish DNA Sheds Light on Time Dependency

(2008) C. P. Burridge et al.   MOLECULAR BIOLOGY AND EVOLUTION