The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

Mitochondrial DNA Content Contributes to Climate Adaptation Using Chinese Populations as a Model

(2013) Yao-Ting Cheng et al.   PLoS One

The cybrid invasion: widespread postglacial dispersal by Phoxinus (Pisces: Cyprinidae) cytoplasmic hybrids

(2012) J.A. Mee et al.   CANADIAN JOURNAL OF ZOOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

LRPPRC mutation suppresses cytochrome oxidase activity by altering mitochondrial RNA transcript stability in a mouse model

(2011) Fenghao Xu et al.   BIOCHEMICAL JOURNAL

Mechanism of protein biosynthesis in mammalian mitochondria

(2011) Brooke E. Christian et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

INTERSPECIFIC X-CHROMOSOME AND MITOCHONDRIAL DNA INTROGRESSION IN THE IBERIAN HARE: SELECTION OR ALLELE SURFING?

(2011) José Melo-Ferreira et al.   EVOLUTION

Hybrid origin of Audubon’s warbler

(2011) ALAN BRELSFORD et al.   MOLECULAR ECOLOGY

The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection

(2011) Ivanna H. Tomasco et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Variation in the Analysis of Positively Selected Sites Using Nonsynonymous/Synonymous Rate Ratios: An Example Using Influenza Virus

(2011) Jiming Chen et al.   PLoS One

Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon

(2011) Michael R. Garvin et al.   PLoS One

Phylogeny Estimation of the Radiation of Western North American Chipmunks (Tamias) in the Face of Introgression Using Reproductive Protein Genes

(2011) Noah Reid et al.   SYSTEMATIC BIOLOGY

Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations

(2011) J. Melo-Ferreira et al.   SYSTEMATIC BIOLOGY

Positive selection on the killer whale mitogenome

(2010) A. D. Foote et al.   Biology Letters

Distinct patterns of mitochondrial genome diversity in bonobos (Pan paniscus) and humans

(2010) Gábor Zsurka et al.   BMC EVOLUTIONARY BIOLOGY

Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes

(2010) Linda Y Rutledge et al.   BMC EVOLUTIONARY BIOLOGY

Preventing the pollution of mitochondrial datasets with nuclear mitochondrial paralogs (numts)

(2010) Sébastien Calvignac et al.   MITOCHONDRION

Evaluating the Roles of Energetic Functional Constraints on Teleost Mitochondrial-Encoded Protein Evolution

(2010) Yan-Bo Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Evolution of Cytochrome c Oxidase Underlies High-Altitude Adaptation in the Bar-Headed Goose

(2010) G. R. Scott et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial DNA mutations and human disease

(2009) Helen A.L. Tuppen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Tablet--next generation sequence assembly visualization

(2009) I. Milne et al.   BIOINFORMATICS

Mitochondrial introgression and replacement between yellowhammers (Emberiza citrinella) and pine buntings (Emberiza leucocephalos) (Aves: Passeriformes)

(2009) DARREN E. IRWIN et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Evolution of the Mitochondrial Genome in Mammals Living at High Altitude: New Insights from a Study of the Tribe Caprini (Bovidae, Antilopinae)

(2009) Alexandre Hassanin et al.   JOURNAL OF MOLECULAR EVOLUTION

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

Complete mitochondrial DNA replacement in a Lake Tanganyika cichlid fish

(2009) B. NEVADO et al.   MOLECULAR ECOLOGY

Introducing mother’s curse: low male fertility associated with an imported mtDNA haplotype in a captive colony of brown hares

(2009) STEVE SMITH et al.   MOLECULAR ECOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Ancient mtDNA Genetic Variants Modulate mtDNA Transcription and Replication

(2009) Sarit Suissa et al.   PLoS Genetics

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Mitochondrial genome analysis of Ochotona curzoniae and implication of cytochrome c oxidase in hypoxic adaptation

(2008) Yongjun Luo et al.   MITOCHONDRION

Evidence for Variable Selective Pressures at a Large Secondary Structure of the Human Mitochondrial DNA Control Region

(2008) F. Pereira et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

The Vienna RNA Websuite

(2008) A. R. Gruber et al.   NUCLEIC ACIDS RESEARCH

The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus

(2008) P. C Alves et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary implications of non-neutral mitochondrial genetic variation

(2008) D DOWLING et al.   TRENDS IN ECOLOGY & EVOLUTION