Commercial chicken breeds exhibit highly divergent patterns of linkage disequilibrium

Whole genome sequences are required to fully resolve the linkage disequilibrium structure of human populations

(2015) Reuben J. Pengelly et al.   BMC GENOMICS

Third Report on Chicken Genes and Chromosomes 2015

(2015) Michael Schmid et al.   CYTOGENETIC AND GENOME RESEARCH

Functional classification of 15 million SNPs detected from diverse chicken populations

(2015) A. A. Gheyas et al.   DNA RESEARCH

Stable recombination hotspots in birds

(2015) S. Singhal et al.   SCIENCE

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

The UCSC Genome Browser database: 2014 update

(2013) Donna Karolchik et al.   NUCLEIC ACIDS RESEARCH

Exome-based linkage disequilibrium maps of individual genes: functional clustering and relationship to disease

(2012) Jane Gibson et al.   HUMAN GENETICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Regional differences in recombination hotspots between two chicken populations

(2010) Martin G Elferink et al.   BMC GENETICS

Linkage disequilibrium reveals different demographic history in egg laying chickens

(2010) Saber Qanbari et al.   BMC GENETICS

Whole-genome resequencing reveals loci under selection during chicken domestication

(2010) Carl-Johan Rubin et al.   NATURE

Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination

(2010) S. Myers et al.   SCIENCE

PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice

(2010) F. Baudat et al.   SCIENCE

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

(2009) Hendrik-Jan Megens et al.   BMC GENETICS

Accelerated Evolution of the Prdm9 Speciation Gene across Diverse Metazoan Taxa

(2009) Peter L. Oliver et al.   PLoS Genetics

Confounding between recombination and selection, and the Ped/Pop method for detecting selection

(2008) P. F. O'Reilly et al.   GENOME RESEARCH

A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

(2008) M. A.M. Groenen et al.   GENOME RESEARCH

A Comparison of Methods to Detect Recombination Hotspots

(2008) William Tapper et al.   HUMAN HEREDITY