标题
Atomic force microscopy—A tool for structural and translational DNA research
作者
关键词
-
出版物
APL Bioengineering
Volume 5, Issue 3, Pages 031504
出版商
AIP Publishing
发表日期
2021-07-09
DOI
10.1063/5.0054294
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- TopoStats – A program for automated tracing of biomolecules from AFM images
- (2021) Joseph G. Beton et al. METHODS
- Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides
- (2021) Alice L. B. Pyne et al. Nature Communications
- Bending and looping of long DNA by Polycomb repressive complex 2 revealed by AFM imaging in liquid
- (2020) Patrick R Heenan et al. NUCLEIC ACIDS RESEARCH
- Rad50 zinc hook functions as a constitutive dimerization module interchangeable with SMC hinge
- (2020) Hisashi Tatebe et al. Nature Communications
- Quantitative Assessment of Tip Effects in Single‐Molecule High‐Speed Atomic Force Microscopy Using DNA Origami Substrates
- (2020) Charlotte Kielar et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Automated AFM analysis of DNA bending reveals initial lesion sensing strategies of DNA glycosylases
- (2020) Disha M. Bangalore et al. Scientific Reports
- Photothermal excitation efficiency enhancement of cantilevers by electron beam deposition of amorphous carbon thin films
- (2020) Marcos Penedo et al. Scientific Reports
- Imaging DNA Equilibrated onto Mica in Liquid Using Biochemically Relevant Deposition Conditions
- (2019) Patrick R. Heenan et al. ACS Nano
- Single-molecule kinetics of pore assembly by the membrane attack complex
- (2019) Edward S. Parsons et al. Nature Communications
- Molecular-scale visualization and surface charge density measurement of Z-DNA in aqueous solution
- (2019) Hiroaki Kominami et al. Scientific Reports
- Specific effects of antitumor active norspermidine on the structure and function of DNA
- (2019) Takashi Nishio et al. Scientific Reports
- DNA accessibility of chromatosomes quantified by automated image analysis of AFM data
- (2019) Martin Würtz et al. Scientific Reports
- Structural basis of nucleosome assembly by the Abo1 AAA+ ATPase histone chaperone
- (2019) Carol Cho et al. Nature Communications
- Live-cell imaging reveals the dynamics of PRC2 and recruitment to chromatin by SUZ12-associated subunits
- (2018) Daniel T. Youmans et al. GENES & DEVELOPMENT
- Analysis of single, cisplatin-induced DNA bends by atomic force microscopy and simulations
- (2018) Samrat Dutta et al. JOURNAL OF MOLECULAR RECOGNITION
- High-speed photothermal off-resonance atomic force microscopy reveals assembly routes of centriolar scaffold protein SAS-6
- (2018) Adrian P. Nievergelt et al. Nature Nanotechnology
- High-resolution AFM structure of DNA G-wires in aqueous solution
- (2018) Krishnashish Bose et al. Nature Communications
- 20 Years of Mre11 Biology: No End in Sight
- (2018) Tanya T. Paull MOLECULAR CELL
- Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States
- (2018) Paolo Bettotti et al. Scientific Reports
- Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells
- (2018) Hilal Taymaz-Nikerel et al. Scientific Reports
- Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy
- (2018) Tine Brouns et al. ACS Nano
- Accurate nanoscale flexibility measurement of DNA and DNA–protein complexes by atomic force microscopy in liquid
- (2017) Divakaran Murugesapillai et al. Nanoscale
- Imaging modes of atomic force microscopy for application in molecular and cell biology
- (2017) Yves F. Dufrêne et al. Nature Nanotechnology
- Real-space and real-time dynamics of CRISPR-Cas9 visualized by high-speed atomic force microscopy
- (2017) Mikihiro Shibata et al. Nature Communications
- DNA nanomapping using CRISPR-Cas9 as a programmable nanoparticle
- (2017) Andrey Mikheikin et al. Nature Communications
- Topoisomerase-Based Preparation and AFM Imaging of Multi-Interlocked Circular DNA
- (2016) Tevin Li et al. BIOCONJUGATE CHEMISTRY
- Studies of G-quadruplexes formed within self-assembled DNA mini-circles
- (2016) Beata Klejevskaja et al. CHEMICAL COMMUNICATIONS
- Single-Molecule Studies of Unlabeled Full-Length p53 Protein Binding to DNA
- (2016) Philippa Nuttall et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Toward an Effective Control of DNA’s Submolecular Conformation on a Surface
- (2016) Aleksandre Japaridze et al. MACROMOLECULES
- High resolution atomic force microscopy of double-stranded RNA
- (2016) Pablo Ares et al. Nanoscale
- Studying Z-DNA and B- to Z-DNA transitions using a cytosine analogue FRET-pair
- (2016) Blaise Dumat et al. NUCLEIC ACIDS RESEARCH
- Seeing is believing: atomic force microscopy imaging for nanomaterial research
- (2016) Jian Zhong et al. RSC Advances
- PeakForce Tapping resolves individual microvilli on living cells
- (2015) Hermann Schillers et al. JOURNAL OF MOLECULAR RECOGNITION
- Tuning the translational freedom of DNA for high speed AFM
- (2015) Andrew J. Lee et al. Nano Research
- G-quadruplexes and their regulatory roles in biology
- (2015) Daniela Rhodes et al. NUCLEIC ACIDS RESEARCH
- Structural diversity of supercoiled DNA
- (2015) Rossitza N. Irobalieva et al. Nature Communications
- Micro-contact printing of graphene oxide nanosheets for fabricating patterned polymer brushes
- (2014) Peng Xiao et al. CHEMICAL COMMUNICATIONS
- Ultrastable atomic force microscopy: Improved force and positional stability
- (2014) Allison B. Churnside et al. FEBS LETTERS
- Polycomb Repressive Complex 2 and H3K27me3 Cooperate with H3K9 Methylation To Maintain Heterochromatin Protein 1 at Chromatin
- (2014) J. Boros et al. MOLECULAR AND CELLULAR BIOLOGY
- Interaction of APOBEC3A with DNA Assessed by Atomic Force Microscopy
- (2014) Luda S. Shlyakhtenko et al. PLoS One
- Single-Molecule Reconstruction of Oligonucleotide Secondary Structure by Atomic Force Microscopy
- (2014) Alice Pyne et al. Small
- Dynamics of Nucleosomal Structures Measured by High-Speed Atomic Force Microscopy
- (2014) Allard J. Katan et al. Small
- Widespread transient Hoogsteen base pairs in canonical duplex DNA with variable energetics
- (2014) Heidi S. Alvey et al. Nature Communications
- Beyond the Helix Pitch: Direct Visualization of Native DNA in Aqueous Solution
- (2013) Shinichiro Ido et al. ACS Nano
- Stability, resolution, and ultra-low wear amplitude modulation atomic force microscopy of DNA: Small amplitude small set-point imaging
- (2013) Sergio Santos et al. APPLIED PHYSICS LETTERS
- High-Resolution Imaging of Plasmid DNA in Liquids in Dynamic Mode Atomic Force Microscopy Using a Carbon Nanofiber Tip
- (2013) Masashi Kitazawa et al. JAPANESE JOURNAL OF APPLIED PHYSICS
- Time-Lapse AFM Imaging of DNA Conformational Changes Induced by Daunorubicin
- (2013) Livan Alonso-Sarduy et al. NANO LETTERS
- Patchiness of ion-exchanged mica revealed by DNA binding dynamics at short length scales
- (2013) D J Billingsley et al. NANOTECHNOLOGY
- Multiparametric imaging of biological systems by force-distance curve–based AFM
- (2013) Yves F Dufrêne et al. NATURE METHODS
- Single molecule analysis of DNA wrapping and looping by a circular 14mer wheel of the bacteriophage 186 CI repressor
- (2013) Haowei Wang et al. NUCLEIC ACIDS RESEARCH
- Norspermidine and Novel Pd(II) and Pt(II) Polynuclear Complexes of Norspermidine as Potential Antineoplastic Agents Against Breast Cancer
- (2013) Tânia Magalhães Silva et al. PLoS One
- Atomic Force Microscopy with Nanoscale Cantilevers Resolves Different Structural Conformations of the DNA Double Helix
- (2012) Carl Leung et al. NANO LETTERS
- Atomic-resolution imaging in liquid by frequency modulation atomic force microscopy using small cantilevers with megahertz-order resonance frequencies
- (2012) T Fukuma et al. NANOTECHNOLOGY
- Demonstration of Ligand Decoration, and Ligand-Induced Perturbation, of G-Quadruplexes in a Plasmid Using Atomic Force Microscopy
- (2011) Ioanna Mela et al. BIOCHEMISTRY
- Human topoisomerase II-DNA interaction study by using atomic force microscopy
- (2011) Livan Alonso-Sarduy et al. FEBS LETTERS
- Protein–DNA interactions in high speed AFM: single molecule diffusion analysis of human RAD54
- (2011) Humberto Sanchez et al. Integrative Biology
- Biological AFM: where we come from - where we are - where we may go
- (2011) Ignacio Casuso et al. JOURNAL OF MOLECULAR RECOGNITION
- Imaging of nucleic acids with atomic force microscopy
- (2011) Yuri L. Lyubchenko et al. METHODS
- Transient Hoogsteen base pairs in canonical duplex DNA
- (2011) Evgenia N. Nikolova et al. NATURE
- Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification
- (2011) Ashley H. Hardin et al. NUCLEIC ACIDS RESEARCH
- Cooperative kinking at distant sites in mechanically stressed DNA
- (2011) Troy A. Lionberger et al. NUCLEIC ACIDS RESEARCH
- Topo IV is the topoisomerase that knots and unknots sister duplexes during DNA replication
- (2011) Virginia López et al. NUCLEIC ACIDS RESEARCH
- Secondary structure of double-stranded DNA under stretching: Elucidation of the stretched form
- (2011) M. Maaloum et al. PHYSICAL REVIEW E
- High efficiency laser photothermal excitation of microcantilever vibrations in air and liquids
- (2011) Daniel Kiracofe et al. REVIEW OF SCIENTIFIC INSTRUMENTS
- Localized Nanoscopic Surface Measurements of Nickel-Modified Mica for Single-Molecule DNA Sequence Sampling
- (2010) Carlin Hsueh et al. ACS Applied Materials & Interfaces
- DNA Topoisomerases and Their Poisoning by Anticancer and Antibacterial Drugs
- (2010) Yves Pommier et al. CHEMISTRY & BIOLOGY
- Atomic force microscopy study of DNA conformation in the presence of drugs
- (2010) Valeria Cassina et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Development of High-Resolution Imaging of Solid–Liquid Interface by Frequency Modulation Atomic Force Microscopy
- (2010) Katsuyuki Suzuki et al. JAPANESE JOURNAL OF APPLIED PHYSICS
- Theoretical and experimental investigation of optically driven nanoelectromechanical oscillators
- (2010) B. Ilic et al. JOURNAL OF APPLIED PHYSICS
- Structure of duplex DNA containing the cisplatin 1,2-{Pt(NH3)2}2+-d(GpG) cross-link at 1.77Å resolution
- (2010) Ryan C. Todd et al. JOURNAL OF INORGANIC BIOCHEMISTRY
- Separating DNA with Different Topologies by Atomic Force Microscopy in Comparison with Gel Electrophoresis
- (2010) Yong Jiang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Global Structure of Forked DNA in Solution Revealed by High-Resolution Single-Molecule FRET
- (2010) Tara Sabir et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Intrinsic Z-DNA Is Stabilized by the Conformational Selection Mechanism of Z-DNA-Binding Proteins
- (2010) Sangsu Bae et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Video imaging of walking myosin V by high-speed atomic force microscopy
- (2010) Noriyuki Kodera et al. NATURE
- DNA topology and topoisomerases
- (2009) Joseph E. Deweese et al. BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION
- DNA Deformations near Charged Surfaces: Electron and Atomic Force Microscopy Views
- (2009) F.G.A. Faas et al. BIOPHYSICAL JOURNAL
- UVA Generates Pyrimidine Dimers in DNA Directly
- (2009) Yong Jiang et al. BIOPHYSICAL JOURNAL
- G-quadruplex nucleic acids as therapeutic targets
- (2009) Shankar Balasubramanian et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Human telomeric G-quadruplex: The current status of telomeric G-quadruplexes as therapeutic targets in human cancer
- (2009) Stephen Neidle FEBS Journal
- Insights into the architecture and stoichiometry of Escherichia coli PepA*DNA complexes involved in transcriptional control and site-specific DNA recombination by atomic force microscopy
- (2009) P. N. L. Minh et al. NUCLEIC ACIDS RESEARCH
- Direct visualization of G-quadruplexes in DNA using atomic force microscopy
- (2009) Kelly J. Neaves et al. NUCLEIC ACIDS RESEARCH
- Cisplatin induces loop structures and condensation of single DNA molecules
- (2009) X.-M. Hou et al. NUCLEIC ACIDS RESEARCH
- Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles
- (2009) Davide Demurtas et al. NUCLEIC ACIDS RESEARCH
- Wideband low-noise optical beam deflection sensor with photothermal excitation for liquid-environment atomic force microscopy
- (2009) Takeshi Fukuma REVIEW OF SCIENTIFIC INSTRUMENTS
- Unmasking Imaging Forces on Soft Biological Samples in Liquids When Using Dynamic Atomic Force Microscopy: A Case Study on Viral Capsids
- (2008) Xin Xu et al. BIOPHYSICAL JOURNAL
- A Novel Small Molecule That Alters Shelterin Integrity and Triggers a DNA-Damage Response at Telomeres
- (2008) Raphaël Rodriguez et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The promotion of secondary structures in single-stranded DNA by drugs that bind to duplex DNA: an atomic force microscopy study
- (2008) Jozef Adamcik et al. NANOTECHNOLOGY
- How flat is an air-cleaved mica surface?
- (2008) F Ostendorf et al. NANOTECHNOLOGY
- Photothermal excitation and laser Doppler velocimetry of higher cantilever vibration modes for dynamic atomic force microscopy in liquid
- (2008) Shuhei Nishida et al. REVIEW OF SCIENTIFIC INSTRUMENTS
- Nanoscale Detection of Ionizing Radiation Damage to DNA by Atomic Force Microscopy
- (2008) Changhong Ke et al. Small
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now