METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses
出版年份 2021 全文链接
标题
METAnnotatorX2: a Comprehensive Tool for Deep and Shallow Metagenomic Data Set Analyses
作者
关键词
-
出版物
mSystems
Volume -, Issue -, Pages -
出版商
American Society for Microbiology
发表日期
2021-06-29
DOI
10.1128/msystems.00583-21
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data
- (2020) Kyle D. Brumfield et al. PLoS One
- Accurate and complete genomes from metagenomes
- (2020) Lin-Xing Chen et al. GENOME RESEARCH
- A review of 10 years of human microbiome research activities at the US National Institutes of Health, Fiscal Years 2007-2016
- (2019) Microbiome
- Methods to Investigate the Global Atmospheric Microbiome
- (2019) Aurelien Dommergue et al. Frontiers in Microbiology
- New approaches for metagenome assembly with short reads
- (2019) Martin Ayling et al. BRIEFINGS IN BIOINFORMATICS
- Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
- (2019) Denis Bertrand et al. NATURE BIOTECHNOLOGY
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- (2019) Evan Bolyen et al. NATURE BIOTECHNOLOGY
- Benchmarking Metagenomics Tools for Taxonomic Classification
- (2019) Simon H. Ye et al. CELL
- A microbiome reality check: limitations of in silico ‐based metagenomic approaches to study complex bacterial communities
- (2019) Gabriele Andrea Lugli et al. Environmental Microbiology Reports
- Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI
- (2018) Stacy Ciufo et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Drinking water microbiome assembly induced by water stagnation
- (2018) Fangqiong Ling et al. ISME Journal
- Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX
- (2018) Christian Milani et al. Microbiome
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Evaluating the Information Content of Shallow Shotgun Metagenomics
- (2018) Benjamin Hillmann et al. mSystems
- Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
- (2017) GLYCOBIOLOGY
- The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
- (2017) Christian Milani et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- The MetaCyc database of metabolic pathways and enzymes
- (2017) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Technological Microbiology: Development and Applications
- (2017) Luciana C. Vitorino et al. Frontiers in Microbiology
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- High speed BLASTN: an accelerated MegaBLAST search tool
- (2015) Ying Chen et al. NUCLEIC ACIDS RESEARCH
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2015) Ron Caspi et al. NUCLEIC ACIDS RESEARCH
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
- (2011) T. Carver et al. BIOINFORMATICS
- The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
- (2011) R. Caspi et al. NUCLEIC ACIDS RESEARCH
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
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