Dual-Organ Transcriptomic Analysis of Rainbow Trout Infected With Ichthyophthirius multifiliis Through Co-Expression and Machine Learning
出版年份 2021 全文链接
标题
Dual-Organ Transcriptomic Analysis of Rainbow Trout Infected With Ichthyophthirius multifiliis Through Co-Expression and Machine Learning
作者
关键词
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出版物
Frontiers in Immunology
Volume 12, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2021-07-08
DOI
10.3389/fimmu.2021.677730
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV)
- (2020) Ahran Kim et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Differential regulation of the immune system in a brain-liver-fats organ network during short-term fasting
- (2020) Susie S.Y. Huang et al. Molecular Metabolism
- Multi-Omics Analysis Provides Novel Insight into Immuno-Physiological Pathways and Development of Thermal Resistance in Rainbow Trout Exposed to Acute Thermal Stress
- (2020) HyeongJin Roh et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Experimental infection with Anguillicola crassus alters immune gene expression in both spleen and head kidney of the European eel (Anguilla anguilla)
- (2019) Seraina E. Bracamonte et al. Marine Genomics
- Immune responses of fish to Ichthyophthirius multifiliis (Ich): A model for understanding immunity against protozoan parasites
- (2019) Qingchao Wang et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- MLSeq: Machine learning interface for RNA-sequencing data
- (2019) Dincer Goksuluk et al. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
- Differential immune gene response in gills, skin, and spleen of rainbow trout Oncorhynchus mykiss infected by Ichthyophthirius multifiliis
- (2019) Khairul Syahputra et al. PLoS One
- Transcriptome Analysis Based on RNA-Seq in Understanding Pathogenic Mechanisms of Diseases and the Immune System of Fish: A Comprehensive Review
- (2018) Arun Sudhagar et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Identifying novel candidate biomarkers of RCC based on WGCNA analysis
- (2018) Jin Deng et al. Personalized Medicine
- Association between adaptive immunity and neutrophil dynamics in zebrafish (Danio rerio) infected by a parasitic ciliate
- (2018) Louise von Gersdorff Jørgensen et al. PLoS One
- Transcriptomic analysis of immunity in rainbow trout (Oncorhynchus mykiss) gills infected by Ichthyophthirius multifiliis
- (2018) Khairul Syahputra et al. FISH & SHELLFISH IMMUNOLOGY
- The fish parasite Ichthyophthirius multifiliis – Host immunology, vaccines and novel treatments
- (2017) Louise von Gersdorff Jørgensen FISH & SHELLFISH IMMUNOLOGY
- A comprehensive simulation study on classification of RNA-Seq data
- (2017) Gökmen Zararsız et al. PLoS One
- Zebrafish Danio rerio as a model to study the immune response against infection with Ichthyophthirius multifiliis
- (2016) T B Christoffersen et al. JOURNAL OF FISH DISEASES
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- Platelet Activation: The Mechanisms and Potential Biomarkers
- (2016) Seong-Hoon Yun et al. Biomed Research International
- Parasite-induced ER stress response in hepatocytes facilitates Plasmodium liver stage infection
- (2015) P. Inacio et al. EMBO REPORTS
- Transcriptomic and proteomic analyses of splenic immune mechanisms of rainbow trout (Oncorhynchus mykiss) infected by Aeromonas salmonicida subsp. salmonicida
- (2015) Meng Long et al. Journal of Proteomics
- Machine learning applications in genetics and genomics
- (2015) Maxwell W. Libbrecht et al. NATURE REVIEWS GENETICS
- Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations
- (2015) Ovidiu D. Iancu et al. Frontiers in Genetics
- Energy crisis: The role of oxidative phosphorylation in acute inflammation and sepsis
- (2014) Icksoo Lee et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
- Characterization of serum amyloid A (SAA) in rainbow trout using a new monoclonal antibody
- (2014) Per W. Kania et al. FISH & SHELLFISH IMMUNOLOGY
- Endoplasmic Reticulum Stress Triggers Gametocytogenesis in the Malaria Parasite
- (2014) Shweta Chaubey et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Pathophysiology of Ichthyophthirius multifiliis Infection in Rainbow Trout (Oncorhynchus mykiss) and Chub (Leuciscus cephalus)
- (2014) G. Abdel-Hafez et al. JOURNAL OF COMPARATIVE PATHOLOGY
- Early Immune Responses in Rainbow Trout Liver upon Viral Hemorrhagic Septicemia Virus (VHSV) Infection
- (2014) Rosario Castro et al. PLoS One
- The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
- (2014) Camille Berthelot et al. Nature Communications
- Ferroptosis: An Iron-Dependent Form of Nonapoptotic Cell Death
- (2012) Scott J. Dixon et al. CELL
- Inflammatory response of rainbow trout Oncorhynchus mykiss (Walbaum, 1792) larvae against Ichthyophthirius multifiliis
- (2012) Rasmus D. Heinecke et al. FISH & SHELLFISH IMMUNOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Classification and clustering of sequencing data using a Poisson model
- (2011) Daniela M. Witten Annals of Applied Statistics
- Mechanisms of Leukocyte Transendothelial Migration
- (2011) William A. Muller Annual Review of Pathology-Mechanisms of Disease
- Cellular and humoral factors involved in the response of rainbow trout gills to Ichthyophthirius multifiliis infections: Molecular and immunohistochemical studies
- (2011) Moonika M. Olsen et al. FISH & SHELLFISH IMMUNOLOGY
- Impact ofSalmonellaInfection on Host Hormone Metabolism Revealed by Metabolomics
- (2011) L. Caetano M. Antunes et al. INFECTION AND IMMUNITY
- Experimental evidence for direct in situ binding of IgM and IgT to early trophonts of Ichthyophthirius multifiliis (Fouquet) in the gills of rainbow trout, Oncorhynchus mykiss (Walbaum)
- (2011) L von Gersdorff Jørgensen et al. JOURNAL OF FISH DISEASES
- Immune Functioning in Non lymphoid Organs: The Liver
- (2011) George A. Parker et al. TOXICOLOGIC PATHOLOGY
- Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
- (2011) Robert S Coyne et al. GENOME BIOLOGY
- Haematopoiesis in the head kidney of common carp (Cyprinus carpio L.): a morphological study
- (2010) Elżbieta Kondera FISH PHYSIOLOGY AND BIOCHEMISTRY
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Mechanics and contraction dynamics of single platelets and implications for clot stiffening
- (2010) Wilbur A. Lam et al. NATURE MATERIALS
- Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
- (2010) Daniele Merico et al. PLoS One
- ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
- (2009) Gabriela Bindea et al. BIOINFORMATICS
- TopHat: discovering splice junctions with RNA-Seq
- (2009) Cole Trapnell et al. BIOINFORMATICS
- WGCNA: an R package for weighted correlation network analysis
- (2008) Peter Langfelder et al. BMC BIOINFORMATICS
- Immune-relevant genes expressed in rainbow trout following immunisation with a live vaccine against Ichthyophthirius multifiliis
- (2008) L von Gersdorff Jørgensen et al. DISEASES OF AQUATIC ORGANISMS
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