Rapid Evolutionary Rates and Unique Genomic Signatures Discovered in the First Reference Genome for the Southern Ocean Salp,Salpa thompsoni(Urochordata, Thaliacea)

Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates

(2015) Domitille Chalopin et al.   Genome Biology and Evolution

Pyrosequencing andde novoassembly of Antarctic krill (Euphausia superba)transcriptome to study the adaptability of krill to climate-induced environmental changes

(2015) B. Meyer et al.   Molecular Ecology Resources

Polar Bears Exhibit Genome-Wide Signatures of Bioenergetic Adaptation to Life in the Arctic Environment

(2014) Andreanna J. Welch et al.   Genome Biology and Evolution

Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types

(2014) Susanne U. Franssen et al.   Marine Genomics

Resolving the complexity of the human genome using single-molecule sequencing

(2014) Mark J. P. Chaisson et al.   NATURE

Transcriptomic Analysis of Petunia hybrida in Response to Salt Stress Using High Throughput RNA Sequencing

(2014) Gonzalo H. Villarino et al.   PLoS One

Ribosomal DNA copy number is coupled with gene expression variation and mitochondrial abundance in humans

(2014) John G. Gibbons et al.   Nature Communications

L_RNA_scaffolder: scaffolding genomes with transcripts

(2013) Wei Xue et al.   BMC GENOMICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

West Antarctic Peninsula: An Ice-Dependent Coastal Marine Ecosystem in Transition

(2013) Hugh Ducklow et al.   OCEANOGRAPHY

Proximity of krill and salps in an Antarctic coastal ecosystem: evidence from penguin-mounted cameras

(2013) Nobuo Kokubun et al.   POLAR BIOLOGY

The impact of temperature on marine phytoplankton resource allocation and metabolism

(2013) A. Toseland et al.   Nature Climate Change

The genome sequence of the colonial chordate, Botryllus schlosseri

(2013) Ayelet Voskoboynik et al.   eLife

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Unique small RNA signatures uncovered in the tammar wallaby genome

(2012) James Lindsay et al.   BMC GENOMICS

Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics

(2012) Fekadu Yadetie et al.   BMC GENOMICS

Focus on miRNAs evolution: a perspective from amphioxus

(2012) S. Candiani   Briefings in Functional Genomics

Marine invertebrates cross phyla comparisons reveal highly conserved immune machinery

(2012) Matan Oren et al.   IMMUNOBIOLOGY

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Thermal acclimation in Antarctic fish: transcriptomic profiling of metabolic pathways

(2011) Heidrun Sigrid Windisch et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Correcting errors in short reads by multiple alignments

(2011) L. Salmela et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Peptidomic Analysis of the Central Nervous System of the Protochordate,Ciona intestinalis: Homologs and Prototypes of Vertebrate Peptides and Novel Peptides

(2011) Tsuyoshi Kawada et al.   ENDOCRINOLOGY

GAGE: A critical evaluation of genome assemblies and assembly algorithms

(2011) S. L. Salzberg et al.   GENOME RESEARCH

Peculiar patterns of amino acid substitution and conservation in the fast evolving tunicate Oikopleura dioica

(2011) Luisa Berná et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

Population dynamics of Salpa thompsoni near the Antarctic Peninsula: Growth rates and interannual variations in reproductive activity (1993–2009)

(2011) V.J. Loeb et al.   PROGRESS IN OCEANOGRAPHY

Ribosomal DNA Deletions Modulate Genome-Wide Gene Expression: “rDNA–Sensitive” Genes and Natural Variation

(2011) Silvana Paredes et al.   PLoS Genetics

Deep-sea sampling on CMarZ cruises in the Atlantic Ocean – an Introduction

(2010) Peter H. Wiebe et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A molecular phylogeny of the Thaliacea

(2010) A. F. Govindarajan et al.   JOURNAL OF PLANKTON RESEARCH

Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate

(2010) F. Denoeud et al.   SCIENCE

miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data

(2010) David Hendrix et al.   GENOME BIOLOGY

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

How Fast Is the Sessile Ciona?

(2009) Luisa Berná et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution

(2009) Zhonghua Dai et al.   EVOLUTION & DEVELOPMENT

A distinct class of small RNAs arises from pre-miRNA–proximal regions in a simple chordate

(2009) Weiyang Shi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Defecation by Salpa thompsoni and its contribution to vertical flux in the Southern Ocean

(2008) Brennan Phillips et al.   MARINE BIOLOGY

Altered miRNA Repertoire in the Simplified Chordate, Oikopleura dioica

(2008) X. Fu et al.   MOLECULAR BIOLOGY AND EVOLUTION

The amphioxus genome and the evolution of the chordate karyotype

(2008) Nicholas H. Putnam et al.   NATURE

MicroRNAs and the advent of vertebrate morphological complexity

(2008) A. M. Heimberg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA