Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila

Competitive history shapes rapid evolution in a seasonal climate

(2021) Tess Nahanni Grainger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Limits to Estimating Population-Genetic Parameters with Temporal Data

(2020) Michael Lynch et al.   Genome Biology and Evolution

Genomic Analysis of European Drosophila melanogaster Populations Reveals Longitudinal Structure, Continent-Wide Selection, and Previously Unknown DNA Viruses

(2020) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the genome-wide contribution of selection to temporal allele frequency change

(2020) Vince Buffalo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecology shapes epistasis in a genotype–phenotype–fitness map for stick insect colour

(2020) Patrik Nosil et al.   Nature Ecology & Evolution

Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster

(2020) María Bogaerts‐Márquez et al.   MOLECULAR ECOLOGY

Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster

(2020) Priscilla A. Erickson et al.   PLoS Genetics

Genetic redundancy fuels polygenic adaptation in Drosophila

(2019) Neda Barghi et al.   PLOS BIOLOGY

Different mechanisms drive the maintenance of polymorphism at loci subject to strong versus weak fluctuating selection

(2019) Jason Bertram et al.   EVOLUTION

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

(2019) Seth M. Rudman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid seasonal evolution in innate immunity of wild Drosophila melanogaster

(2018) Emily L. Behrman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Spatiotemporal dynamics and genome-wide association analysis of desiccation tolerance in Drosophila melanogaster

(2018) Subhash Rajpurohit et al.   MOLECULAR ECOLOGY

The adaptive significance of chromosomal inversion polymorphisms in Drosophila melanogaster

(2018) Martin Kapun et al.   MOLECULAR ECOLOGY

Gene flow and selection interact to promote adaptive divergence in regions of low recombination

(2017) Kieran Samuk et al.   MOLECULAR ECOLOGY

Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift

(2017) Meike J. Wittmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genomics of Wolbachia and mtDNA in Drosophila simulans from California

(2017) Sarah Signor   Scientific Reports

Genomics of parallel adaptation at two timescales in Drosophila

(2017) Li Zhao et al.   PLoS Genetics

What genomic data can reveal about eco-evolutionary dynamics

(2017) Seth M. Rudman et al.   Nature Ecology & Evolution

Divergence and Functional Degradation of a Sex Chromosome-like Supergene

(2016) Elaina M. Tuttle et al.   CURRENT BIOLOGY

Adaptive dynamics of cuticular hydrocarbons inDrosophila

(2016) S. Rajpurohit et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster

(2016) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Thousand Fly Genomes: An ExpandedDrosophilaGenome Nexus

(2016) Justin B. Lack et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative population genomics of latitudinal variation inDrosophila simulansandDrosophila melanogaster

(2016) Heather E. Machado et al.   MOLECULAR ECOLOGY

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster

(2016) Nicolas Svetec et al.   PLoS Genetics

Emergence of long-term balanced polymorphism under cyclic selection of spatially variable magnitude

(2015) Davorka Gulisija et al.   EVOLUTION

Variability in thermal and phototactic preferences inDrosophilamay reflect an adaptive bet-hedging strategy

(2015) Jamey S. Kain et al.   EVOLUTION

Seasonal variation in life history traits in twoDrosophilaspecies

(2015) E. L. Behrman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Population genomic analysis uncovers African and European admixture inDrosophila melanogasterpopulations from the south-eastern United States and Caribbean Islands

(2015) Joyce Y. Kao et al.   MOLECULAR ECOLOGY

Causes of natural variation in fitness: Evidence from studies ofDrosophilapopulations

(2015) Brian Charlesworth   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Diversity Lines–A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains

(2015) Jennifer K. Grenier et al.   G3-Genes Genomes Genetics

A highly pleiotropic amino acid polymorphism in theDrosophilainsulin receptor contributes to life-history adaptation

(2014) Annalise B. Paaby et al.   EVOLUTION

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Parallel ionoregulatory adjustments underlie phenotypic plasticity and evolution of Drosophila cold tolerance

(2014) H. A. MacMillan et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Integrating Temperature-Dependent Life Table Data into a Matrix Projection Model for Drosophila suzukii Population Estimation

(2014) Nik G. Wiman et al.   PLoS One

Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel

(2014) Y. B. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary tipping points in the capacity to adapt to environmental change

(2014) Carlos A. Botero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in Drosophila melanogaster central metabolic genes appears driven by natural selection both within and between populations

(2014) R. Cogni et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Genome-wide evolutionary response to a heat wave in Drosophila

(2013) F. Rodriguez-Trelles et al.   Biology Letters

THE INTENSITY OF SELECTION ACTING ON THECOUCH POTATOGENE-SPATIAL-TEMPORAL VARIATION IN A DIAPAUSE CLINE

(2013) Rodrigo Cogni et al.   EVOLUTION

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Whole-genome sequencing of two North AmericanDrosophila melanogasterpopulations reveals genetic differentiation and positive selection

(2013) D. Campo et al.   MOLECULAR ECOLOGY

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

An Overview of the Global Historical Climatology Network-Daily Database

(2012) Matthew J. Menne et al.   JOURNAL OF ATMOSPHERIC AND OCEANIC TECHNOLOGY

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Empirical Validation of Pooled Whole Genome Population Re-Sequencing in Drosophila melanogaster

(2012) Yuan Zhu et al.   PLoS One

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data

(2012) Alison F. Feder et al.   PLoS One

Upper thermal limits of Drosophila are linked to species distributions and strongly constrained phylogenetically

(2012) V. Kellermann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

Population Genomics of Inversion Polymorphisms in Drosophila melanogaster

(2012) Russell B. Corbett-Detig et al.   PLoS Genetics

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

(2012) John E. Pool et al.   PLoS Genetics

Thermal Tolerance in Widespread and Tropical Drosophila Species: Does Phenotypic Plasticity Increase with Latitude?

(2011) Johannes Overgaard et al.   AMERICAN NATURALIST

The Newest Synthesis: Understanding the Interplay of Evolutionary and Ecological Dynamics

(2011) T. W. Schoener   SCIENCE

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Physiological climatic limits in Drosophila: patterns and implications

(2010) A. A. Hoffmann   JOURNAL OF EXPERIMENTAL BIOLOGY

Evidence that Adaptation in Drosophila Is Not Limited by Mutation at Single Sites

(2010) Talia Karasov et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

It’s about time: the temporal dynamics of phenotypic selection in the wild

(2009) Adam M. Siepielski et al.   ECOLOGY LETTERS

A STRUCTURED COALESCENT PROCESS FOR SEASONALLY FLUCTUATING POPULATIONS

(2009) Max Shpak et al.   EVOLUTION

Quantitative Trait Loci Affecting Phenotypic Plasticity and the Allometric Relationship of Ovariole Number and Thorax Length in Drosophila melanogaster

(2008) A. O. Bergland et al.   GENETICS

Adaptive topography of fluctuating selection in a Mendelian population

(2008) R. LANDE   JOURNAL OF EVOLUTIONARY BIOLOGY